PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G231400.1

Common Name

B456_002G231400, LOC105786254

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 443aa MW: 50964 Da PI: 6.7681

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G231400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.4	1.1e-24	117	213	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+++erg+++sp+qC++k+++lnkrykk+ ++ +++ +++++++ Gorai.002G231400.1 117 KWTDKMVRLLITAVSYIGEDMAGDCgggirrkfavlQKKGKWKSVSKVIAERGYHVSPQQCEDKFNDLNKRYKKLYDMLGRGiSCQVVENP 207 7*******************99888899999999*******************************************9999999999 PP trihelix 80 pyfdql 85 +++d + Gorai.002G231400.1 208 ALLDVI 213 888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-21	115	240	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MEGNLSRGII PGGSSFGGLD LQGSMMVHHR AQNPHNMHHH HHHPNPRRGT SAHPRFPLTV 60 GTMQNSDQPV TVIDYNKMEI GKCSVSDEDE PSFAEEGVDG HNDGNKGKKG SPWQRVKWTD 120 KMVRLLITAV SYIGEDMAGD CGGGIRRKFA VLQKKGKWKS VSKVIAERGY HVSPQQCEDK 180 FNDLNKRYKK LYDMLGRGIS CQVVENPALL DVIDYLTEKE KDDVRKILSS KHLFYEEMCS 240 YHNGNRLHLP HDLKLQRSLQ LALRRRDEDE NDDVRRHQHD DLDDDDHDME TDDHDELEEN 300 HASHGDNRAI FGAPGGSTKR SRQSQVHEDA CFQKFLNSQD CNKSSFSCPP VAQADTNQVL 360 PDYSRAAWLQ KQWTESRSLQ LEEQKLQIQV EMLELEKQRF KWQRFSKKSD CELEKIRMEN 420 ERMKLENERM ALELKRKELA AD*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MEGNLSRGII PGGSSFGGLD LQGSMMVHHR AQNPHNMHHH HHHPNPRRGT SAHPRFPLTV  60
GTMQNSDQPV TVIDYNKMEI GKCSVSDEDE PSFAEEGVDG HNDGNKGKKG SPWQRVKWTD  120
KMVRLLITAV SYIGEDMAGD CGGGIRRKFA VLQKKGKWKS VSKVIAERGY HVSPQQCEDK  180
FNDLNKRYKK LYDMLGRGIS CQVVENPALL DVIDYLTEKE KDDVRKILSS KHLFYEEMCS  240
YHNGNRLHLP HDLKLQRSLQ LALRRRDEDE NDDVRRHQHD DLDDDDHDME TDDHDELEEN  300
HASHGDNRAI FGAPGGSTKR SRQSQVHEDA CFQKFLNSQD CNKSSFSCPP VAQADTNQVL  360
PDYSRAAWLQ KQWTESRSLQ LEEQKLQIQV EMLELEKQRF KWQRFSKKSD CELEKIRMEN  420
ERMKLENERM ALELKRKELA AD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468067.1	0.0	PREDICTED: uncharacterized protein LOC105786254
TrEMBL	A0A0D2QHP8	0.0	A0A0D2QHP8_GOSRA; Uncharacterized protein
STRING	Gorai.002G231400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-151	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.002G231400.1
Entrez Gene	105786254

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]