PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G228200.2

Common Name

B456_002G228200, LOC105786219

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 471aa MW: 52693.6 Da PI: 7.9884

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G228200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.2e-11	178	213	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ Gorai.002G228200.2 178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 213 7789***********************985555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-8	171	220	No hit	No description
SMART	SM00338	1.0E-8	174	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	176	220	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.92E-22	178	230	No hit	No description
Pfam	PF00170	5.1E-8	178	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-7	178	220	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.9E-31	269	342	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MATSRSNMNH SIQLDHHHHH QNQDHHQSHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE 60 LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT SRGLVSPSTS 120 GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKREGNRK GPTTSSSEQE GPKTPDPKTL 180 RRLAQNREAA RKSRLRKKAY VQQLESSRIR LTQLEQELQR ARAQGMFFGG GNMLGGEQGL 240 PVGINNISSE AAVFDMEYGR WVEEHHRLMC ELRAAVQEHL PENELRMYVD NCLAHFDEVM 300 NLKGMAAKTD VFHLVSGMWK TPAERCFMWI AGFRPSHLIK VILNQIEPLT EQQIMGICAL 360 QQSTQEAEEA LSQGLEALNQ SLSDIIISDS LSCPSNMSNY MGQMAIAINK LSTLEGFVRQ 420 ADNLRHQAIH RLHQILTIRQ AARCLLAIAE YFHRLRALSS LWLARPRQEQ *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MATSRSNMNH SIQLDHHHHH QNQDHHQSHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE  60
LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT SRGLVSPSTS  120
GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKREGNRK GPTTSSSEQE GPKTPDPKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRIR LTQLEQELQR ARAQGMFFGG GNMLGGEQGL  240
PVGINNISSE AAVFDMEYGR WVEEHHRLMC ELRAAVQEHL PENELRMYVD NCLAHFDEVM  300
NLKGMAAKTD VFHLVSGMWK TPAERCFMWI AGFRPSHLIK VILNQIEPLT EQQIMGICAL  360
QQSTQEAEEA LSQGLEALNQ SLSDIIISDS LSCPSNMSNY MGQMAIAINK LSTLEGFVRQ  420
ADNLRHQAIH RLHQILTIRQ AARCLLAIAE YFHRLRALSS LWLARPRQEQ *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269\|PubMed:12777042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468015.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A0D2RB02	0.0	A0A0D2RB02_GOSRA; Uncharacterized protein
STRING	Gorai.002G228200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-174	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G228200.2
Entrez Gene	105786219

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]