PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G228200.1

Common Name

B456_002G228200, LOC105786219

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 472aa MW: 52821.7 Da PI: 7.9884

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G228200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	179	214	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ Gorai.002G228200.1 179 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 214 7789***********************985555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-8	172	221	No hit	No description
SMART	SM00338	1.0E-8	175	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	177	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-7	179	221	No hit	No description
CDD	cd14708	2.67E-22	179	231	No hit	No description
Pfam	PF00170	5.1E-8	179	216	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	182	197	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.9E-31	270	343	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MATSRSNMNH SIQLDHHHHH QNQDHHQSHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE 60 LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT SRGLVSPSTS 120 GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKQREGNR KGPTTSSSEQ EGPKTPDPKT 180 LRRLAQNREA ARKSRLRKKA YVQQLESSRI RLTQLEQELQ RARAQGMFFG GGNMLGGEQG 240 LPVGINNISS EAAVFDMEYG RWVEEHHRLM CELRAAVQEH LPENELRMYV DNCLAHFDEV 300 MNLKGMAAKT DVFHLVSGMW KTPAERCFMW IAGFRPSHLI KVILNQIEPL TEQQIMGICA 360 LQQSTQEAEE ALSQGLEALN QSLSDIIISD SLSCPSNMSN YMGQMAIAIN KLSTLEGFVR 420 QADNLRHQAI HRLHQILTIR QAARCLLAIA EYFHRLRALS SLWLARPRQE Q*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MATSRSNMNH SIQLDHHHHH QNQDHHQSHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE  60
LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT SRGLVSPSTS  120
GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKQREGNR KGPTTSSSEQ EGPKTPDPKT  180
LRRLAQNREA ARKSRLRKKA YVQQLESSRI RLTQLEQELQ RARAQGMFFG GGNMLGGEQG  240
LPVGINNISS EAAVFDMEYG RWVEEHHRLM CELRAAVQEH LPENELRMYV DNCLAHFDEV  300
MNLKGMAAKT DVFHLVSGMW KTPAERCFMW IAGFRPSHLI KVILNQIEPL TEQQIMGICA  360
LQQSTQEAEE ALSQGLEALN QSLSDIIISD SLSCPSNMSN YMGQMAIAIN KLSTLEGFVR  420
QADNLRHQAI HRLHQILTIR QAARCLLAIA EYFHRLRALS SLWLARPRQE Q*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269\|PubMed:12777042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468014.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A0D2QAL3	0.0	A0A0D2QAL3_GOSRA; Uncharacterized protein
STRING	Gorai.002G228200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-173	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G228200.1
Entrez Gene	105786219

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]