PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G219800.1
Common NameB456_002G219800, LOC105786141
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 355aa    MW: 40081.3 Da    PI: 7.3083
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G219800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-1072113240
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                         +++k +rr+++NReAAr+sR RKka++++Le    k ++Le+
  Gorai.002G219800.1  72 PSDKIQRRLAQNREAARKSRMRKKAYVQQLESsrlKLAQLEQ 113
                         6899***************************83333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-967120No hitNo description
SMARTSM003384.0E-671131IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.27873117IPR004827Basic-leucine zipper domain
PfamPF001704.5E-773111IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.24E-775116No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
PfamPF141441.2E-28162236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSPSTELTR RMAIYEQFHH ISRWADTFNG DNSPNIGSST IVPADVRLKN KAECIACEQV  60
EPSISDQETN KPSDKIQRRL AQNREAARKS RMRKKAYVQQ LESSRLKLAQ LEQELERARQ  120
QGIHIAGASE AGYFELSGTV NSGITSFEME YRHWVEEQNR LICELRTAVQ AHITDIELRI  180
LVESGLNHYY NLFRMKADAA KADVFYLISG IWRTSAERFF HWIGGFRPSA LLNVVVPQIE  240
PLTDQQHLEV CNLRQSSQEA EDALSQGVEK LQQSLAESVA SDLCSGNYRA QMVAAIDKLE  300
ALENFVSQAD HLRQQTLQQM ARILTTRQAA RGLLAMGEYF HRLRALSSLS AARA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430921e-136AC243092.1 Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467907.10.0PREDICTED: transcription factor TGA3-like
RefseqXP_012467908.10.0PREDICTED: transcription factor TGA3-like
RefseqXP_012467909.10.0PREDICTED: transcription factor TGA3-like
SwissprotQ93ZE21e-154TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A0D2RAK80.0A0A0D2RAK8_GOSRA; Uncharacterized protein
STRINGGorai.002G219800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-138bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]