PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G215000.2

Common Name

B456_002G215000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 529aa MW: 55715.8 Da PI: 7.2398

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G215000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.7	7.1e-41	170	275	3	114
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ Gorai.002G215000.2 170 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP---- 256 5699****************************************************************9997777777777744444.... PP TCP 93 saakskksqksaasalnlakes 114 +sk++++s + al+la ++ Gorai.002G215000.2 257 ---PSKSAPHSFHGALALASHH 275 ...3333333333333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.6E-39	174	274	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	175	229	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MELTDLQSNK QTKNNSSSSN NNNNNSAEPH HQSLQQHHLQ HQKQSASPQL VVPFDGTRSS 60 GPSSGNPFNM GSISHLHPHH PFHHLLLHPA SSTTTTTTTP PLPSSSTSSS SSSSASTTTT 120 NPPQLVDASL AIATRSTSLN IDSKNQTDLP ISSTTTPAST TTTTTTANPP VKRSTKDRHT 180 KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS 240 TLNISLRSSG STLSAPPSKS APHSFHGALA LASHHHHHHP YEEGFAHSAL LGFQQQHLLT 300 ADQIAEALPG GGGGDGGNLS ENYMRKRFRE DLFKDDDQQQ GESGSGGGDG SPIKAFKSGL 360 TQLSKPQQDA GSSALPRPSN ILPGTAIAGA GGPSVAPSAA TGAGPSDHPQ MWPFGTANQA 420 SGNTLQAPLH FLPRFNLPGN VEFQGGRASP LQLGSMLMQQ QQQQQQPHHH LGLGMSDSNL 480 GMLAALNAYS RGGSNVNSDQ NNPLEHHHQQ HQPQGTDSGD DQDPNTSQ*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MELTDLQSNK QTKNNSSSSN NNNNNSAEPH HQSLQQHHLQ HQKQSASPQL VVPFDGTRSS  60
GPSSGNPFNM GSISHLHPHH PFHHLLLHPA SSTTTTTTTP PLPSSSTSSS SSSSASTTTT  120
NPPQLVDASL AIATRSTSLN IDSKNQTDLP ISSTTTPAST TTTTTTANPP VKRSTKDRHT  180
KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS  240
TLNISLRSSG STLSAPPSKS APHSFHGALA LASHHHHHHP YEEGFAHSAL LGFQQQHLLT  300
ADQIAEALPG GGGGDGGNLS ENYMRKRFRE DLFKDDDQQQ GESGSGGGDG SPIKAFKSGL  360
TQLSKPQQDA GSSALPRPSN ILPGTAIAGA GGPSVAPSAA TGAGPSDHPQ MWPFGTANQA  420
SGNTLQAPLH FLPRFNLPGN VEFQGGRASP LQLGSMLMQQ QQQQQQPHHH LGLGMSDSNL  480
GMLAALNAYS RGGSNVNSDQ NNPLEHHHQQ HQPQGTDSGD DQDPNTSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527491	0.0	HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467806.1	0.0	PREDICTED: transcription factor TCP8
TrEMBL	A0A0D2NR42	0.0	A0A0D2NR42_GOSRA; Uncharacterized protein
STRING	Gorai.002G215000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-54	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G215000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]