PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.002G197800.2 | ||||||||
Common Name | B456_002G197800, LOC105785918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 258aa MW: 27918.2 Da PI: 6.4984 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.2 | 3.5e-08 | 89 | 135 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++ ka+ + Le++v L a N++L k+l+ Gorai.002G197800.2 89 KSKKRPLGNREAVRKYREKVKARAASLEDEVVRLRALNQQLVKRLQG 135 77899999**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-7 | 85 | 152 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.1E-12 | 86 | 153 | No hit | No description |
Pfam | PF07716 | 1.4E-13 | 87 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.05E-5 | 89 | 135 | No hit | No description |
CDD | cd14686 | 3.34E-11 | 91 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MDDGELDYSN QEVFSVNNMG DIPSSCSMDS FFDELLNDSH ACTHTHTCNP PGPDNSHTHT 60 CFHFHTKIVP ASSEDKAAID GTAVSGENKS KKRPLGNREA VRKYREKVKA RAASLEDEVV 120 RLRALNQQLV KRLQGQAALE AEVARLKCLL VDIRGRIEGE IGPFPYQKPA TNVNMMNVPG 180 AYVMNPCNVQ CNDQMYCLHP GLEDKTGEAA ALNGQGFNGC DFDNIQCLAN QNSTGGIGIA 240 GLNGNYSGTK RRKATAG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467575.1 | 0.0 | PREDICTED: uncharacterized protein LOC105785918 isoform X2 | ||||
Swissprot | Q8GTS2 | 1e-111 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A0D2Q976 | 0.0 | A0A0D2Q976_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G197800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16770.1 | 1e-113 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.002G197800.2 |
Entrez Gene | 105785918 |
Publications ? help Back to Top | |||
---|---|---|---|
|