PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.002G178800.1 | ||||||||
Common Name | B456_002G178800, LOC105785710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 28427.5 Da PI: 8.9532 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+ n++++ +++ LA +l+L rqV vWFqNrRa+ k Gorai.002G178800.1 93 RKKLRLTKEQSRLLEESFRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSK 147 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117 | 1.1e-37 | 93 | 181 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF+ +++L+p++K +la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr + Gorai.002G178800.1 93 RKKLRLTKEQSRLLEESFRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 181 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-17 | 78 | 147 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-18 | 78 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 91 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.75E-15 | 92 | 150 | No hit | No description |
Pfam | PF00046 | 1.6E-15 | 93 | 147 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.0E-22 | 149 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.7E-10 | 149 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MNFTFYLLKI NRYLSLLCSS ATFMAVLPTG SSHLELTISV PGFASSPSFP SSGDQGGCTV 60 RDLDINQVPA EDEWITASME DEEESCNNGA PPRKKLRLTK EQSRLLEESF RLNHTLNPKQ 120 KGALALQLKL RPRQVEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLTEQNR RLQREVEELR 180 AMKVAPPTVI SPHSCEPLPA STLTMCPRCE RVTTTTTAAI EKGSAKMTAA TNPTATTLSS 240 KVGTSALQSR PSSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 141 | 149 | RRARSKLKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ393673 | 1e-75 | GQ393673.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0638 SSR marker CGR5696 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467291.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 8e-84 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 8e-84 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0D2MCI0 | 0.0 | A0A0D2MCI0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G178800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-69 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.002G178800.1 |
Entrez Gene | 105785710 |
Publications ? help Back to Top | |||
---|---|---|---|
|