PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G137300.1
Common NameB456_002G137300, LOC105785239
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28221.8 Da    PI: 8.1092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G137300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-19105159256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk+q  +Le+ F+++ ++  ++++ LA+kl+L  rqV vWFqNrRa+ k
  Gorai.002G137300.1 105 RKKLRLTKHQSAILEDRFKEHATLCPKQKQALAAKLDLRPRQVEVWFQNRRARTK 159
                         78889************************************************98 PP
2HD-ZIP_I/II117.29.6e-38105193189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl+k+q+++LE+ F+e+ +L p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL++
  Gorai.002G137300.1 105 RKKLRLTKHQSAILEDRFKEHATLCPKQKQALAAKLDLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELKS 193
                         69*************************************************************************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-18101162IPR009057Homeodomain-like
PROSITE profilePS5007116.115101161IPR001356Homeobox domain
SMARTSM003891.9E-15103165IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-18104164IPR009057Homeodomain-like
CDDcd000862.64E-16105162No hitNo description
PfamPF000461.5E-16105159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
SMARTSM003402.4E-20161204IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9161193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGSDDICSSG LGLGLGWNVK ENFSQSDHQQ KKKKSLVRDE HFFPSLTLGP SSDDDARKAH  60
GDDQQASSVT ALSSFSNSSV KKEGDVEFER VSSRVGDEDD EGCHRKKLRL TKHQSAILED  120
RFKEHATLCP KQKQALAAKL DLRPRQVEVW FQNRRARTKL KQTEVDCELL KKCCETLTEE  180
NKRLQKELQE LKSWKLTASY CMQLPAAATL TMCPSCERVA NGGDGPPATT TSIPFTIGPK  240
SHFINSLSHP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466662.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466049e-72HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2NMS60.0A0A0D2NMS6_GOSRA; Uncharacterized protein
STRINGGorai.002G137300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-71HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]