PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G135900.1

Common Name

B456_002G135900, LOC105785223

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 164aa MW: 19013.2 Da PI: 9.258

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G135900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	55	107	4	56
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++rrk++NRe+A+rsR RKk ++e+L++ v ++ eN++Lk++l +++ Gorai.002G135900.1 55 ERKQRRKISNRESAKRSRWRKKRYLENLTNQVNKMNIENRRLKNRLHLVLNQC 107 589*****************************************999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.6E-12	52	107	No hit	No description
SMART	SM00338	1.5E-13	52	116	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	54	100	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-11	56	110	No hit	No description
Pfam	PF00170	2.4E-10	56	107	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.95E-15	57	108	No hit	No description
PROSITE pattern	PS00036	0	59	74	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MFSAEEAVGS QLPVHESGFT PEELNELLSF FESNEPVSSN SSSENSSRAI YSPDERKQRR 60 KISNRESAKR SRWRKKRYLE NLTNQVNKMN IENRRLKNRL HLVLNQCHVV WGDNEQLRSE 120 SFALWAKLLD LYWTLAAMQC NHDNSRHSLS CFNSNKLSSH SIN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	76	RRKISNRESAKRSRWRKKR
2	73	96	RKKRYLENLTNQVNKMNIENRRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466633.1	1e-116	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2NMR0	1e-114	A0A0D2NMR0_GOSRA; Uncharacterized protein
STRING	Gorai.002G135900.1	1e-115	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	9e-18	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Gorai.002G135900.1
Entrez Gene	105785223

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]