PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G130300.1

Common Name

B456_002G130300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 428aa MW: 48869.4 Da PI: 7.6341

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G130300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.7	2.5e-19	63	144	11	97
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++rl +p kfa+++++k + t+tl+ +sg W+v+l+++ ++ ++ +GWk Fvk++ L ++Df++Fk++g s f v +f Gorai.002G130300.1 63 DFLQRLEIPEKFAKNIKKK--LPETVTLKGPSGIIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DVLMF 144 55689******888755..888************54443.4599**********************998888..66655 PP
2	B3	45.6	1.2e-14	302	382	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f +++p +v+++ + +p ++++ k + +++l+ + r+W+ ++ y ++++ l++GW++Fv++n+L+e D++vF+ Gorai.002G130300.1 302 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVFQP 382 677899******************42.3..334676655.78***8877776678********************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.04E-23	52	145	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.776	53	147	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.0E-23	55	145	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.53E-20	55	145	No hit	No description
SMART	SM01019	1.5E-16	56	147	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-16	65	141	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-19	298	397	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.5E-13	302	383	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.65E-19	302	391	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.02E-19	302	397	No hit	No description
SMART	SM01019	2.3E-12	302	395	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.097	302	400	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
RLLPYGSSTQ AQSQSQLHQL HPSLCSLWLK QMEDTCKDCR DWEEEIFWTH FQSVHFTQFL 60 HGDFLQRLEI PEKFAKNIKK KLPETVTLKG PSGIIWDVRL TVDDDDTLFF NGGWKTFVKD 120 HSLVANDFLI FKYNGVSHFD VLMFDGKSLC EKASSYFVRK CMHTESDATR QTKRKVNENS 180 DEILHNSSQC GLESGPEKST NNDMDARPSR KPIKSAASKK IRNSDNGTQS IHAKQSLVGK 240 ELPTFPGEVK VERLETEYEH TTMDGDGDVF GLWHTTGKRF VTQFEKTNVI LKAQEALTNE 300 GFMIIMKPTH VGRRFYMAVP TAWVAKYLPK DNADVILRMN KRTWKTRFYY HRSRDCGGLS 360 GGWRNFVNDN NLEEHDVCVF QPANIGRKPM ILDVNIFHVL QKAVPLSQAD PLPSSPELIA 420 STPDMDS*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

RLLPYGSSTQ AQSQSQLHQL HPSLCSLWLK QMEDTCKDCR DWEEEIFWTH FQSVHFTQFL  60
HGDFLQRLEI PEKFAKNIKK KLPETVTLKG PSGIIWDVRL TVDDDDTLFF NGGWKTFVKD  120
HSLVANDFLI FKYNGVSHFD VLMFDGKSLC EKASSYFVRK CMHTESDATR QTKRKVNENS  180
DEILHNSSQC GLESGPEKST NNDMDARPSR KPIKSAASKK IRNSDNGTQS IHAKQSLVGK  240
ELPTFPGEVK VERLETEYEH TTMDGDGDVF GLWHTTGKRF VTQFEKTNVI LKAQEALTNE  300
GFMIIMKPTH VGRRFYMAVP TAWVAKYLPK DNADVILRMN KRTWKTRFYY HRSRDCGGLS  360
GGWRNFVNDN NLEEHDVCVF QPANIGRKPM ILDVNIFHVL QKAVPLSQAD PLPSSPELIA  420
STPDMDS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466546.1	0.0	PREDICTED: B3 domain-containing protein REM16
Refseq	XP_012466548.1	0.0	PREDICTED: B3 domain-containing protein REM16
Refseq	XP_012466549.1	0.0	PREDICTED: B3 domain-containing protein REM16
TrEMBL	A0A0D2Q5I0	0.0	A0A0D2Q5I0_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.002G130300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10428	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-79	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G130300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]