PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G125600.1

Common Name

B456_002G125600, LOC105784785

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 308aa MW: 34165.9 Da PI: 6.9172

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G125600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.8	5.8e-72	91	241	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 ++g+++CqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++ + ++ kr +++ + +l++t+ls Gorai.002G125600.1 91 KHGGMNCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQHHQQHEDQFRGENPKRLRENQGSPSLACTRLS 181 6899****************************************************999998885555555555556888899999999 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s le ++P+evss+avfrcv+vs++dd++ee+aYqtav+i+GhvfkGiLydqG+e+ Gorai.002G125600.1 182 PTTSG--LELGQFPPEVSSPAVFRCVKVSAMDDEDEEFAYQTAVNIAGHVFKGILYDQGPES 241 88765..88899**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-68	94	240	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-27	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.9E-27	191	239	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAGLFYLGGR EADTGNKQEE DKEESLYLYR NEEIYNKGFE IWPQYYYQQQ QQQQQENVNT 60 ISFGAGPSRR ARGFNLSDEP SSRSVGFTVM KHGGMNCQDC GNQAKKDCAH MRCRTCCKSR 120 GFQCQTHVKS TWVPAAKRRE RQQQLAALQH HQQHEDQFRG ENPKRLRENQ GSPSLACTRL 180 SPTTSGLELG QFPPEVSSPA VFRCVKVSAM DDEDEEFAYQ TAVNIAGHVF KGILYDQGPE 240 SHYTGGGESS QQLNLITAAV TTAETARTTT TAAISSNPAT SMLDPSLYPA PLNAFIAGTQ 300 FFPPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616287	0.0	JX616287.1 Gossypium hirsutum clone NBRI_GE60826 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466169.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	1e-103	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0D2QC22	0.0	A0A0D2QC22_GOSRA; Uncharacterized protein
STRING	Gorai.002G125600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-91	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.002G125600.1
Entrez Gene	105784785

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]