PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.002G042500.1 | ||||||||
Common Name | B456_002G042500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 193aa MW: 21309.9 Da PI: 10.011 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.6 | 1.5e-09 | 147 | 184 | 4 | 41 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k rr+++NReAAr sR+RKk ++++Le L++ Gorai.002G042500.1 147 QKTLRRLAQNREAARNSRLRKKTYVQQLESSRLRLTEL 184 6889*************************865555554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 9.082 | 146 | 192 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.9E-7 | 148 | 186 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.69E-6 | 148 | 189 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 150 | 182 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 151 | 166 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MPSWPTYIKS LQDRFGCKPF WDSIRELVNL KQEGSISSLK SNNVGVVANT LHYGALNTSI 60 GATATVSSGM GCLDTGQFMY QKGATLGAFL GNGQIKNWAD SGLADYSQQT DTSTDVDTNH 120 KNQLHGVQHG AVMVKTIDQS KSKSNDQKTL RRLAQNREAA RNSRLRKKTY VQQLESSRLR 180 LTELEQELQR AQ* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016735336.1 | 3e-88 | PREDICTED: transcription factor PERIANTHIA-like | ||||
Swissprot | Q9SX27 | 1e-29 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | A0A0D2M6L3 | 1e-141 | A0A0D2M6L3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G042500.1 | 1e-141 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM37236 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68640.1 | 8e-20 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.002G042500.1 |