PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G029200.4
Common NameB456_002G029200, LOC105775272
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 589aa    MW: 64713.4 Da    PI: 5.9495
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G029200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-29126179155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Gorai.002G029200.4 126 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 179
                         79*******************.********************************8 PP
2Response_reg32.54.3e-1215653109
                         CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  Ga d+l Kp+ +e+l +
  Gorai.002G029200.4   1 MPDMDGFKLLEHIGLEM-DLPVIMMSADDGKDVVMKGVTHGACDYLIKPVRIEALKN 56 
                         9************6654.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.27E-16170IPR011006CheY-like superfamily
PfamPF000725.5E-9156IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.8E-1301580IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.9E-20187No hitNo description
CDDcd001562.53E-12161No hitNo description
PROSITE profilePS5011024.548162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466893.05E-20123183IPR009057Homeodomain-like
PROSITE profilePS5129411.048123182IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-30125184IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-25126179IPR006447Myb domain, plants
PfamPF002498.1E-8128178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MPDMDGFKLL EHIGLEMDLP VIMMSADDGK DVVMKGVTHG ACDYLIKPVR IEALKNIWQH  60
VVRKRKNEWK DLEQSGSVEE GDRQPKQSED ADYSSSVNEG NWKSSKKRKD DEDETEDRDD  120
TSTLKKPRVV WSVELHQQFV AAVNQLGIDK AVPKKILELM NVPGLTRENV ASHLQKYRLY  180
LRRLSGVSPH SCNPNNSFMN PQDETFGPLS SVHGLDLQTL TATGQLPAQC LATLQAAVLG  240
RSTAKSSIPM PLVNQRNIFS FENPKLRFGE GQQQHVNNNN KQVNLLHGIP TTMESKQLTS  300
LRRTSQSIGN VSMQVAPHGA QSSQNNSSLI EMGQPLSRVQ ILNDSTVPLS VGQPIVPNGI  360
AANVSTRNGI PENIRAPGYN LVSQTSSILN FPMNHASELP VDSFSLRSTP GMSDHTSKGA  420
FHEDFNSEIK GSGGFLPTYD VFNDYQYKSQ NWELQNAGMI LEDSQHSNSL QGNLDLAQSV  480
LVQQGFPSGQ INGQNRSVPI VSKAMFSAGD STEPGNLLNV NHHLNTIRAE NTVRVKSGSV  540
ADGNPSNLFA DHFGQEDLMI ALLKQQQGIA PAENEFDFDG YSLDNIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-22125185464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453255.10.0PREDICTED: two-component response regulator ARR2
SwissprotQ9ZWJ91e-165ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0D2NHH80.0A0A0D2NHH8_GOSRA; Two-component response regulator
STRINGGorai.002G029200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-153response regulator 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]