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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gorai.002G029200.1 | ||||||||
| Common Name | B456_002G029200, LOC105775272 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 679aa MW: 74506.7 Da PI: 6.0441 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.3 | 8.2e-29 | 216 | 269 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Gorai.002G029200.1 216 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 269
79*******************.********************************8 PP
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| 2 | Response_reg | 74.4 | 4.3e-25 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
vl+vdD+p+ + +l+++l++ y +v+ + +e al +l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + +
Gorai.002G029200.1 38 VLVVDDDPTCLIILEKMLRNCSY-DVTKCNRAETALLKLRENRngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKDVVMKG 126
89*********************.***************99999***********************6654.8****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Gorai.002G029200.1 127 VTHGACDYLIKPVRIEALKN 146
****************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 5.5E-174 | 11 | 670 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 1.3E-41 | 35 | 176 | No hit | No description |
| SuperFamily | SSF52172 | 1.57E-35 | 35 | 160 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 2.7E-29 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.097 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 2.0E-22 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.87E-26 | 39 | 151 | No hit | No description |
| PROSITE profile | PS51294 | 11.048 | 213 | 272 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.58E-20 | 213 | 273 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 215 | 274 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 9.7E-25 | 216 | 269 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.7E-8 | 218 | 268 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 679 aa Download sequence Send to blast |
MKNSSGGKGS MSTASSITTW KAGDVVPVPD QFPAGLRVLV VDDDPTCLII LEKMLRNCSY 60 DVTKCNRAET ALLKLRENRN GFDIVISDVH MPDMDGFKLL EHIGLEMDLP VIMMSADDGK 120 DVVMKGVTHG ACDYLIKPVR IEALKNIWQH VVRKRKNEWK DLEQSGSVEE GDRQPKQSED 180 ADYSSSVNEG NWKSSKKRKD DEDETEDRDD TSTLKKPRVV WSVELHQQFV AAVNQLGIDK 240 AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSPH SCNPNNSFMN PQDETFGPLS 300 SVHGLDLQTL TATGQLPAQC LATLQAAVLG RSTAKSSIPM PLVNQRNIFS FENPKLRFGE 360 GQQQHVNNNN KQVNLLHGIP TTMESKQLTS LRRTSQSIGN VSMQVAPHGA QSSQNNSSLI 420 EMGQPLSRVQ ILNDSTVPLS VGQPIVPNGI AANVSTRNGI PENIRAPGYN LVSQTSSILN 480 FPMNHASELP VDSFSLRSTP GMSDHTSKGA FHEDFNSEIK GSGGFLPTYD VFNDYQYKSQ 540 NWELQNAGMI LEDSQHSNSL QGNLDLAQSV LVQQGFPSGQ INGQNRSVPI VSKAMFSAGD 600 STEPGNLLNV NHHLNTIRAE NTVRVKSGSV ADGNPSNLFA DHFGQEDLMI ALLKQQQGIA 660 PAENEFDFDG YSLDNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 5e-22 | 215 | 275 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed only from 5 days post germination onward, when the fixed meristem cell number is established. {ECO:0000269|PubMed:17363254}. | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JX587930 | 2e-76 | JX587930.1 Gossypium hirsutum clone NBRI_GE22201 microsatellite sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012453255.1 | 0.0 | PREDICTED: two-component response regulator ARR2 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A0D2NHH8 | 0.0 | A0A0D2NHH8_GOSRA; Two-component response regulator | ||||
| STRING | Gorai.002G029200.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Gorai.002G029200.1 |
| Entrez Gene | 105775272 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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