PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G018000.1
Common NameB456_002G018000, LOC105774054
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 421aa    MW: 46837.8 Da    PI: 4.9206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G018000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19212262256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Gorai.002G018000.1 212 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 262
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.47E-34211271No hitNo description
Gene3DG3DSA:3.30.730.104.3E-32212270IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23212270IPR016177DNA-binding domain
PROSITE profilePS5103222.932212269IPR001471AP2/ERF domain
SMARTSM003802.7E-40212275IPR001471AP2/ERF domain
PRINTSPR003678.3E-11213224IPR001471AP2/ERF domain
PfamPF008472.2E-12213262IPR001471AP2/ERF domain
PRINTSPR003678.3E-11235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAAAENSGEF NKGVGDVQDW EVEKGNELDF GFEKRQWKPV FGEASMSQRP NKKITQRQEP  60
VRSIASMADQ SSSLPSSSPS LTLSLPSSSS SSNASLPSSR MVFPFAFDGT QNPVYFPHPM  120
FQPLPQSQQQ MISFSPQQQQ QQQHGFVYRP FFAGESSPVP PPQLPQPSQQ QLLQYWSDTL  180
SPRRRMMMMS RLGQDGRQLY RPPLQPINTT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG  240
TFDTAEDAAL AYDREAFKLR GENARLNFPE LFLNKDKDTS PGPSSTVPPQ DEPKEPNSQS  300
TAMEAMPPPS QGDNNPDSDS GLGSSEATAS DEVQMAAEGS GSGSQELVWG DMSEAWFNVI  360
QEGWGPGSPV WDDLDTSNNL LLPSNLPFPN QNHHQFGDTS SPSSSSSCPM KSFFWKDHDS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21211269160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146530.0JX614653.1 Gossypium hirsutum clone NBRI_GE58209 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451827.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0D2M5N30.0A0A0D2M5N3_GOSRA; Uncharacterized protein
STRINGGorai.002G018000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-49ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]