PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G016800.1
Common NameB456_002G016800, LOC105774006
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 233aa    MW: 26487.8 Da    PI: 6.9408
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G016800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141561248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        g WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
  Gorai.002G016800.1 15 GTWTAEEDRKLTAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                        78*****************99************************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEde ++ +++ lG++ W++Ia++++ gRt++++k++w++ 
  Gorai.002G016800.1  67 RGNFTKEEDETIITLHESLGNR-WSAIAAMLP-GRTDNEIKNHWHTN 111
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.55961IPR017930Myb domain
SuperFamilySSF466897.03E-3012108IPR009057Homeodomain-like
SMARTSM007174.5E-81363IPR001005SANT/Myb domain
PfamPF002493.6E-121561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001674.94E-91661No hitNo description
PROSITE profilePS5129426.36662116IPR017930Myb domain
SMARTSM007178.7E-1866114IPR001005SANT/Myb domain
PfamPF002497.0E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2669115IPR009057Homeodomain-like
CDDcd001672.48E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKKPCCDKS GLRQGTWTAE EDRKLTAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TKEEDETIIT LHESLGNRWS AIAAMLPGRT DNEIKNHWHT NLKKHAKHKP  120
STTKLHDKYT NNQNLNDDHL QINPIIPPLI LESSPPPPLS TNTQSSFTTT DNSVESTKAD  180
SVSDFWSEPF LLDILSDDLP TMGASAGFEF DLLDGEILSP FGFYDHLEPF SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121145106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451743.11e-174PREDICTED: protein ODORANT1-like
SwissprotQ6K1S61e-57MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A0D2NGT11e-173A0A0D2NGT1_GOSRA; Uncharacterized protein
STRINGGorai.002G016800.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2426334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-58myb domain protein 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]