PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G003000.3

Common Name

B456_002G003000, LOC105772694

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 266aa MW: 28593.7 Da PI: 6.0365

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G003000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.8	9.5e-08	88	136	3	51
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e k +r NReA r++Rq+ ka+ + Le++v L + N++L k+l+ Gorai.002G003000.3 88 EKKPKKRSLGNREAVRKYRQKVKARAASLEDEVVRLRTLNQQLLKRLQG 136 668889999***********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-11	85	154	No hit	No description
SMART	SM00338	3.8E-6	86	153	IPR004827	Basic-leucine zipper domain
CDD	cd14686	6.49E-10	87	145	No hit	No description
Pfam	PF07716	4.6E-12	88	143	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.61E-6	90	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MDEGELDFSN HEVFSGGNSM GDIPSSCSMD SFFNEILNDS HACTHTHTCN PPGPDNSHTH 60 TCFHVHTKIV PASTEDEAAA DDTEGSREKK PKKRSLGNRE AVRKYRQKVK ARAASLEDEV 120 VRLRTLNQQL LKRLQGQAAL EAEIARLKCL LVDVRGRIEG EIGSFPYQKP TANNVNTLNL 180 PGAYLMNPCN IQCNDQMYCL QPEVEGNTGE ATALDGHGFN GCEFDDIQCL ASQNSGAKEL 240 PGGGVGSAAS NGNSSGTKRR KATAG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ355030	0.0	DQ355030.1 Gossypium hirsutum putative retinoblastoma binding protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449579.1	0.0	PREDICTED: uncharacterized protein LOC105772694 isoform X2
Swissprot	Q8GTS2	1e-109	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0D2Q5X9	0.0	A0A0D2Q5X9_GOSRA; Uncharacterized protein
STRING	Gorai.002G003000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-106	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G003000.3
Entrez Gene	105772694

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]