PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G251000.1

Common Name

B456_001G251000, LOC105767585

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 198aa MW: 22487.2 Da PI: 6.3092

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G251000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.1	1.1e-14	82	140	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L ++l++ ++ +++ +e+ Gorai.001G251000.1 82 RKQRRMISNRESARRSRMRKQKHLDELWSQVIRLRNENQSLLDKLNHVSESHDRVLQEN 140 79**********************************************99998888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.880.10	4.9E-5	42	96	IPR008917	Transcription factor, Skn-1-like, DNA-binding domain
SMART	SM00338	1.4E-16	78	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.174	80	143	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.06E-13	82	132	No hit	No description
Pfam	PF00170	2.1E-12	82	140	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.10E-19	83	134	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-12	97	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MVPVEFRGLH YLAPENPILI PANLGMMQNS IPSFHFNTFE SSLPNSHIVP SAQEFAALSS 60 SISNTSTSDE AEEQQVNVID ERKQRRMISN RESARRSRMR KQKHLDELWS QVIRLRNENQ 120 SLLDKLNHVS ESHDRVLQEN ARLKEEASDL RQMLTDLKIG SPYSLAFRDL EEVPCNTAHL 180 KAESTNQSIA NSVDLLH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	101	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442613.1	1e-143	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2PWI5	1e-141	A0A0D2PWI5_GOSRA; Uncharacterized protein
STRING	Gorai.001G251000.1	1e-142	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-46	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Gorai.001G251000.1
Entrez Gene	105767585

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]