PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G231400.1
Common NameB456_001G231400, LOC105804468
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 403aa    MW: 45641.3 Da    PI: 4.4323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G231400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.24.5e-3851363128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         +GfrFhPtdeel+ + L +    ++ +l +vi++v di+++ePw+L   ++++++++ wyf      ky+++kr +r+t++gyWk tg+ +
  Gorai.001G231400.1   5 KGFRFHPTDEELIEYLLLETFGVDRDSLVQVIDQVpDICQWEPWQLAesSQLQTGDRLWYFIYAPTYKYRNSKRISRTTREGYWKPTGNAR 95 
                         7************999999999999999999***************74348889999********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         ++++  +ge++g+kktLvfykg  +++   kt Wvmhey+l
  Gorai.001G231400.1  96 KIIDPqTGEVIGTKKTLVFYKGqcNDKYKIKTCWVMHEYEL 136
                         ***9878899**********98445556679********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.3363158IPR003441NAC domain
SuperFamilySSF1019417.45E-384157IPR003441NAC domain
PfamPF023653.6E-205136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNTVKGFRFH PTDEELIEYL LLETFGVDRD SLVQVIDQVP DICQWEPWQL AESSQLQTGD  60
RLWYFIYAPT YKYRNSKRIS RTTREGYWKP TGNARKIIDP QTGEVIGTKK TLVFYKGQCN  120
DKYKIKTCWV MHEYELVAAP NSIDIDQKTF NLCKLKKRVD ISCTDAGQSS QHKDCDDVVH  180
NQSGIKSYAG DRSNQHNIAN DGVVSNLSSH DLDDAIPKEN LHERSKECNE PEGNSGVQKL  240
NSIIEKDDKS CSSVLTDGDE TITVERSDQH NVVVAAEGFG IPSSFEYFDY EVLIPAEFFY  300
NDGLWYDELL EVPEATNNSN WIQDQSINNT EDVEFLNSII VDNDEAYLLE ENRPHPSAAD  360
NEVLGAVGSS DLMEKPSKRL RLSHDDHVET TEARAGGSIT YQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-23113613140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492565.10.0PREDICTED: NAC domain-containing protein 67-like
TrEMBLA0A0D2QUM60.0A0A0D2QUM6_GOSRA; Uncharacterized protein
STRINGGorai.001G231400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2220645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-33TCV-interacting protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]