PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G231300.4 | ||||||||
Common Name | B456_001G231300, LOC105804451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 17092.5 Da PI: 10.8227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38 | 4.1e-12 | 47 | 88 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ Gorai.001G231300.4 47 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 88 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-6 | 46 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-4 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-8 | 47 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-6 | 49 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MVSCGSPNVS GSGSSKEHHN QPFPGQLIKR RKRHRRKHVQ NQEPCLMRGV YFKNMKWQAA 60 IKVDKKQIHL GTVGSQEEAA RLYDRAAFMC GREPNFELSK EEKQELRNFK WDEFLAYTRH 120 SITNKKSKRR LGIRPQKSSE PAIENGQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492539.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_012492549.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_012492557.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_016711913.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_016711914.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_016711915.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 3e-47 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0D2LWB8 | 1e-106 | A0A0D2LWB8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2N726 | 1e-106 | A0A0D2N726_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2PWB0 | 1e-106 | A0A0D2PWB0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LBD2 | 1e-106 | A0A1U8LBD2_GOSHI; ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A2P5XCD8 | 1e-105 | A0A2P5XCD8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G231300.1 | 1e-106 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G231300.4 |
Entrez Gene | 105804451 |
Publications ? help Back to Top | |||
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