PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G213700.1

Common Name

B456_001G213700, LOC105802119

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 853aa MW: 97563.6 Da PI: 6.531

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G213700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.8	2.4e-25	101	186	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++ +s++skr+g++++ + Cs+ g+++e++++ ++r+ +tgCka++++k+++d+kw+++++++eHnHe++p Gorai.001G213700.1 101 FYREYARSVGFGITIVSSRRSKRSGKFIDVKVACSRFGSKRESNTT----LNPRSCPKTGCKARMHIKRRQDEKWVIHSFVKEHNHEICP 186 9*************************************998777....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-23	101	186	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-26	268	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.753	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-6	549	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-5	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MFSMEIDLEV PSKEQEKLIP GSDENSDVLD AAEEIDEEDN NGTPASSEHA VEACEPNLIE 60 SFTGCEDNVD VTTVEANVHE GAIFEPQNGL EFESKETAYA FYREYARSVG FGITIVSSRR 120 SKRSGKFIDV KVACSRFGSK RESNTTLNPR SCPKTGCKAR MHIKRRQDEK WVIHSFVKEH 180 NHEICPDDFY YAIRGRSKQP GAVSCQKKGL QLVLDEKDVE LMLDFFMCMK DENPGSFYAI 240 DFDNEKCARS VFWVDAKGRH NYSHFADVVF FDTFFVRNKY RIPYIPIIGV NHHFQYMLLG 300 CALIGDNTTS AFVWLMRSWL KAMGGHAPKV ILTDQDKVLN EAVADVFPDS RHCFCLWHVL 360 SKFPEHLGCI MNQKENFIKK FNKCIYMSWT HEQFEKRWYR MVDKFELKEH EWVLSLYNDR 420 EKWVPIYMRH IFLAGISTTI RSESVASFFD KFMHKAATFG EFIEQLKSFS LELYEMEAKA 480 DFETQSKQPE LRSVSAFEKQ MSMIYTDTVF KKFQAEILGI VSCHLQKESE DEDNVVFRVD 540 DFEERQNFLV AWSKREFDIC CLCRSFEYKG FLCKHSLLVL QMSGVSDIPC HYILKRWTQE 600 VKIRQTLGEK SNRLHYRVQR FNDLCKRAIK LGEEGSLSQE AYTIALQALE KALKNCVSVN 660 NTGKGVCEPS TSSVHGLLET DAENNWNATT KLSKKKKACK KRKVHFDSEG VSMGQDSCQQ 720 MTSSRANALD GCSVSQQDMH GMDVSSRAPT LDGCYGAQQN IQGMGQLNSI SPFRGGYYCN 780 QQNLLGLGQL HSLAASDNHY GNQQNMQGHL PFRAPAMQGF DIQEGLQDEE RPLDSTHFLG 840 IASKHLHDKL LS*

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MFSMEIDLEV PSKEQEKLIP GSDENSDVLD AAEEIDEEDN NGTPASSEHA VEACEPNLIE  60
SFTGCEDNVD VTTVEANVHE GAIFEPQNGL EFESKETAYA FYREYARSVG FGITIVSSRR  120
SKRSGKFIDV KVACSRFGSK RESNTTLNPR SCPKTGCKAR MHIKRRQDEK WVIHSFVKEH  180
NHEICPDDFY YAIRGRSKQP GAVSCQKKGL QLVLDEKDVE LMLDFFMCMK DENPGSFYAI  240
DFDNEKCARS VFWVDAKGRH NYSHFADVVF FDTFFVRNKY RIPYIPIIGV NHHFQYMLLG  300
CALIGDNTTS AFVWLMRSWL KAMGGHAPKV ILTDQDKVLN EAVADVFPDS RHCFCLWHVL  360
SKFPEHLGCI MNQKENFIKK FNKCIYMSWT HEQFEKRWYR MVDKFELKEH EWVLSLYNDR  420
EKWVPIYMRH IFLAGISTTI RSESVASFFD KFMHKAATFG EFIEQLKSFS LELYEMEAKA  480
DFETQSKQPE LRSVSAFEKQ MSMIYTDTVF KKFQAEILGI VSCHLQKESE DEDNVVFRVD  540
DFEERQNFLV AWSKREFDIC CLCRSFEYKG FLCKHSLLVL QMSGVSDIPC HYILKRWTQE  600
VKIRQTLGEK SNRLHYRVQR FNDLCKRAIK LGEEGSLSQE AYTIALQALE KALKNCVSVN  660
NTGKGVCEPS TSSVHGLLET DAENNWNATT KLSKKKKACK KRKVHFDSEG VSMGQDSCQQ  720
MTSSRANALD GCSVSQQDMH GMDVSSRAPT LDGCYGAQQN IQGMGQLNSI SPFRGGYYCN  780
QQNLLGLGQL HSLAASDNHY GNQQNMQGHL PFRAPAMQGF DIQEGLQDEE RPLDSTHFLG  840
IASKHLHDKL LS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489038.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_012489046.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A0D2M1D9	0.0	A0A0D2M1D9_GOSRA; Uncharacterized protein
STRING	Gorai.001G213700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Gorai.001G213700.1
Entrez Gene	105802119

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]