PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G188300.3
Common NameB456_001G188300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 212aa    MW: 23998.5 Da    PI: 10.721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G188300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11108149351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Gorai.001G188300.3 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149
                         79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-4107164IPR001471AP2/ERF domain
PfamPF008471.6E-5107150IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-8108152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-6110154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGTSSFF TPLSRFFDNG NAPGNSSQSA KLVSVHPMPS DPIHMNGKSI  60
PKVASGSPNV SGSGSSKEHH NQPFPGQPIK RRKRHRRKHV QNQEPCLMRG VYFKNMKWQA  120
AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS EEEKQELRKF KWEEFLAYTR  180
RSITNKSNPF VYEFSMISRA AVVQIFIGVY L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485270.11e-138PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012485278.11e-138PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D2Q0V11e-157A0A0D2Q0V1_GOSRA; Uncharacterized protein
STRINGGorai.001G188300.11e-137(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.19e-48ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]