PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G172200.1
Common NameB456_001G172200, LOC105797431
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28003 Da    PI: 7.5325
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G172200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.65.8e-32959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifs++gklye+ss
  Gorai.001G172200.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSNRGKLYEFSS 59
                        79***********************************************96 PP
2K-box93.73e-3180170999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++e++++s++ e+ kL++++e L+r+qRhllGedL++L++keL++Le+qLe +l + R++K+++++eq+++l+kke++l + nk+L  kle
  Gorai.001G172200.1  80 THERETQSWYLEVIKLNAKYEALERTQRHLLGEDLGPLNMKELHNLEKQLEGALARARQRKTQIMMEQMDDLRKKERQLGDLNKQLIVKLE 170
                         68999*********************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.852161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-42160IPR002100Transcription factor, MADS-box
CDDcd002655.14E-46272No hitNo description
SuperFamilySSF554552.35E-34282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-33323IPR002100Transcription factor, MADS-box
PfamPF003199.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2880169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.7585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSN RGKLYEFSSS  60
GMTKTLERYQ RCCFIPHDNT HERETQSWYL EVIKLNAKYE ALERTQRHLL GEDLGPLNMK  120
ELHNLEKQLE GALARARQRK TQIMMEQMDD LRKKERQLGD LNKQLIVKLE AEGQNLETIQ  180
GLWSCCGAEA TENFPLHLSQ TQPTECDLQP VLQIGYHHYV EAEGSSAPTG MAGETNFIHG  240
WVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-23194189MEF2 CHIMERA
6bz1_B2e-23194189MEF2 CHIMERA
6bz1_C2e-23194189MEF2 CHIMERA
6bz1_D2e-23194189MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141ARARQRKTQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556410.0KC155641.1 Gossypium hirsutum MADS box protein MADS46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482866.10.0PREDICTED: agamous-like MADS-box protein AGL6
SwissprotQ8LLR11e-136MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0D2LZP90.0A0A0D2LZP9_GOSRA; Uncharacterized protein
STRINGGorai.001G172200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-108AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]