PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G133100.1
Common NameB456_001G133100, LOC105770880
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 316aa    MW: 34991.2 Da    PI: 7.1768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G133100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000663355123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F++   L  Hir H
  Gorai.001G133100.1 33 HICSVCSKGFTSGKALGGHIRIH 55
                        68*******************99 PP
2zf-C2H215.16.5e-0592113223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  C+k F++  +L  H+r+H
  Gorai.001G133100.1  92 SCCVCNKDFKSMKSLFGHMRNH 113
                         6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.6E-83357IPR007087Zinc finger, C2H2
SMARTSM003550.0563355IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.62E-83355No hitNo description
PROSITE profilePS501579.7853360IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-43356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-886113No hitNo description
SMARTSM003550.1191113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.01691118IPR007087Zinc finger, C2H2
PfamPF139124.8E-593113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEIETVSSES SDLTPSRPNK FPKLKGPKSC NQHICSVCSK GFTSGKALGG HIRIHMKGNN  60
LDLHSRASKE KKRISKNIDD DAVDVQAEDK VSCCVCNKDF KSMKSLFGHM RNHPNRTWRG  120
IRPPPLEKTS CCSTVSEEDE ALENDQVSFA RDENFVSSLP KRSNTAKRCW NSDEEEIFEA  180
AYSLMKLSRD SFGVGYQTKS SPTTIHETPS WGLPNKASLE GKGKLLAKEL NCDESAEIIE  240
NNSCFDQFHK FPVTISSSQN FGFYLKNPSG RPAVVEGKHL YSASEAGEGS YQVCSRKLLD  300
VDLNEPYVGV DYGLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447698.10.0PREDICTED: uncharacterized protein LOC105770880
TrEMBLA0A0D2LYA40.0A0A0D2LYA4_GOSRA; Uncharacterized protein
STRINGGorai.001G133100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.15e-26C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]