PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G090000.3
Common NameB456_001G090000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26544.4 Da    PI: 10.4012
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G090000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68.1e-291059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rien++ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+e+ss
  Gorai.001G090000.3 10 RIENNISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLFEFSS 59
                        8***********************************************96 PP
2K-box88.51.3e-29801661197
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         ++ +++++ e++kL + ie Lqr++R++ Ge+Le+Lsl++Lq Leqq+ +slk+iR++Kn+l+ e+i+ lqk+ek lq++n++L kk
  Gorai.001G090000.3  80 SESQANWSLESSKLMSTIEVLQRSLRNFRGEELEPLSLRDLQLLEQQIGNSLKRIRTRKNKLMNESISVLQKREKTLQDQNNMLAKK 166
                         56789*******************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-31276IPR002100Transcription factor, MADS-box
CDDcd002651.25E-40271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2580166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59483177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGRVQLRR IENNISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFSN KGKLFEFSSD  60
PSMERILERY ERQIYAPTGS ESQANWSLES SKLMSTIEVL QRSLRNFRGE ELEPLSLRDL  120
QLLEQQIGNS LKRIRTRKNK LMNESISVLQ KREKTLQDQN NMLAKKTPTE HAQHEVQQKF  180
VQNSPPSTSV QPPTPPPAAI QFPCLTIGIE THAITLIPQS FDMKNHAEGV TKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19170169MEF2C
5f28_B1e-19170169MEF2C
5f28_C1e-19170169MEF2C
5f28_D1e-19170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556560.0KC155656.1 Gossypium hirsutum MADS box protein MADS61 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472157.11e-169PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S72e-79AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0D2PIG31e-171A0A0D2PIG3_GOSRA; Uncharacterized protein
STRINGGorai.001G090000.11e-169(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]