PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G089400.1 | ||||||||
Common Name | B456_001G089400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 549aa MW: 60078.1 Da PI: 4.8465 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 455.1 | 4.3e-139 | 171 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv++L++cAeav++++l+la+al++++ las++ +m+++a+yf+eALa+r++r ++pp + ++ + ++ + f+e++P+l Gorai.001G089400.1 171 LVHTLMACAEAVQQDNLKLADALVKHIGLLASSQTGAMRKVATYFAEALARRIYR-------IFPPDSLDP-SYNDK--LQIPFYETCPYL 251 689***************************************************9.......566666653.23333..3335******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 kf+h+taNqaIlea++ ++rvH+iDf+++qG+QWpaL+qaLa R +gpp +R+Tg+g+p+++++++l+++g++La++Ae++g++fef+ +v Gorai.001G089400.1 252 KFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRHGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAERIGIEFEFRGFV 342 ******************************************************************************************* PP GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 a++l+dle+e+L+++p E++aVn v++lh ll++++ +e+ v++ +k ++Pk+v+vveqea+hn++ Fl+rf+eal+yys+lfdsl Gorai.001G089400.1 343 ANSLADLEPEMLDIRPpeIEVVAVNAVFELHPLLARPGGIEK----VVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSL 429 ****************9899*********************9....********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 e + + +++ +++ +lgr+i+nvvaceg +r+erhe l +Wr r+e+aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lg Gorai.001G089400.1 430 EGSGVAPPSQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGFSPVHLGSNAYKQASMLLALFAsGDGYRVEENNGCLMLG 520 777666667889999999************************************************************************* PP GRAS 362 WkdrpLvsvSaWr 374 W++rpL+++SaWr Gorai.001G089400.1 521 WHTRPLIATSAWR 533 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 2.3E-31 | 37 | 109 | No hit | No description |
Pfam | PF12041 | 2.9E-31 | 37 | 102 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 68.982 | 145 | 512 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-136 | 171 | 533 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:2000273 | Biological Process | positive regulation of receptor activity | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MKRDHQEISG SGSKPAESSS IKGKLWEEDP DAGGMDDELL AVLGYKVRSS DMADVAQKLE 60 MLEKVMGTAQ EDGISQLGDT VHFNPSDLSG WVQNLLIEFN GPTTTPDPNF NDDSEYDLRA 120 IPGVAAYPPV KSDPGLENTR KRAKTESSSS SSSTTTRPVV LIDSQETGVR LVHTLMACAE 180 AVQQDNLKLA DALVKHIGLL ASSQTGAMRK VATYFAEALA RRIYRIFPPD SLDPSYNDKL 240 QIPFYETCPY LKFAHFTANQ AILEAFSMAS RVHVIDFGLK QGMQWPALMQ ALALRHGGPP 300 AFRLTGIGPP QPDNTDALQQ VGWKLAQLAE RIGIEFEFRG FVANSLADLE PEMLDIRPPE 360 IEVVAVNAVF ELHPLLARPG GIEKVVSSIK AMKPKIVTVV EQEANHNGPV FLDRFTEALH 420 YYSTLFDSLE GSGVAPPSQD LAMSELYLGR QICNVVACEG MDRVERHEPL TQWRTRMETA 480 GFSPVHLGSN AYKQASMLLA LFASGDGYRV EENNGCLMLG WHTRPLIATS AWRLAGTESG 540 SELTQELS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-70 | 166 | 532 | 14 | 378 | Protein SCARECROW |
5b3h_A | 8e-70 | 166 | 532 | 13 | 377 | Protein SCARECROW |
5b3h_D | 8e-70 | 166 | 532 | 13 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2037 | 0.0 | flower|seedling| flowering |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY208992 | 0.0 | AY208992.1 Gossypium hirsutum GIA/RGA-like gibberellin response modulator (GAI) mRNA, GAI-Dwarf8 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744906.1 | 0.0 | PREDICTED: DELLA protein GAI | ||||
Swissprot | Q84TQ7 | 0.0 | GAI_GOSHI; DELLA protein GAI | ||||
TrEMBL | A0A0D2N7E8 | 0.0 | A0A0D2N7E8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G089400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G089400.1 |
Publications ? help Back to Top | |||
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