PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G075800.1
Common NameB456_001G075800, LOC105788039
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 29163.1 Da    PI: 9.6743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G075800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.1e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  Gorai.001G075800.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59
                        79***********************************************96 PP
2K-box1072.2e-35751741100
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         y++++  ++e++ + s++ e+akLk+++e Lqr+qRh++GedLe+Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n
  Gorai.001G075800.1  75 YAERQLAANENERTGSWTLEHAKLKARMEVLQRNQRHYMGEDLENLSLRELQNLEHQLDSALKHIRSRKNQLMFESISELQKKDKALQEQN 165
                         5667778889999****************************************************************************** PP

               K-box  92 kaLrkklee 100
                         + L kk++e
  Gorai.001G075800.1 166 NVLAKKVKE 174
                         ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.548161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.92E-42279No hitNo description
SuperFamilySSF554551.28E-34289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-2985172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.99488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD  60
SCMERILERY ERYSYAERQL AANENERTGS WTLEHAKLKA RMEVLQRNQR HYMGEDLENL  120
SLRELQNLEH QLDSALKHIR SRKNQLMFES ISELQKKDKA LQEQNNVLAK KVKEKEKEKE  180
KEKEKEMTHQ PQQNNCQDSS SMLPQPLQSL NISDTYEARS NGREEGNPSA AQHRNSNVLL  240
PPWMIPRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q1e-22174173Myocyte-specific enhancer factor 2B
1tqe_R1e-22174173Myocyte-specific enhancer factor 2B
1tqe_S1e-22174173Myocyte-specific enhancer factor 2B
6byy_A2e-22174173MEF2 CHIMERA
6byy_B2e-22174173MEF2 CHIMERA
6byy_C2e-22174173MEF2 CHIMERA
6byy_D2e-22174173MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
6c9l_A1e-22174173Myocyte-specific enhancer factor 2B
6c9l_B1e-22174173Myocyte-specific enhancer factor 2B
6c9l_C1e-22174173Myocyte-specific enhancer factor 2B
6c9l_D1e-22174173Myocyte-specific enhancer factor 2B
6c9l_E1e-22174173Myocyte-specific enhancer factor 2B
6c9l_F1e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6826410.0JQ682641.1 Gossypium hirsutum SQUA-like protein (MADS22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314537.10.0truncated transcription factor CAULIFLOWER A
RefseqXP_012470174.10.0PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ424291e-115AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A0D2QII70.0A0A0D2QII7_GOSRA; Uncharacterized protein
TrEMBLS4TCW10.0S4TCW1_GOSHI; SQUA-like protein
STRINGGorai.001G075800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-97AGAMOUS-like 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]