PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G073600.4
Common NameB456_001G073600, LOC105787797
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32712.9 Da    PI: 4.549
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G073600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.9e-2094147356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa++k
  Gorai.001G073600.4  94 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 147
                         56689************************************************9 PP
2HD-ZIP_I/II126.98.5e-4193184192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++  +L ke+++L++e+
  Gorai.001G073600.4  93 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEV 183
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                          
  Gorai.001G073600.4 184 L 184
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-2082151IPR009057Homeodomain-like
PROSITE profilePS5007117.70289149IPR001356Homeobox domain
SMARTSM003891.1E-1992153IPR001356Homeobox domain
PfamPF000464.5E-1794147IPR001356Homeobox domain
CDDcd000862.42E-1894150No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2096156IPR009057Homeodomain-like
PRINTSPR000313.4E-6120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000313.4E-6129145IPR000047Helix-turn-helix motif
PfamPF021838.4E-14149190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAGGRVFSCN NTNSVGGSNN LSVLLQSQRV PSSSEPMDPL FIPRPGSSPY SFFGTRSMVS  60
FEDVHGGNRS FFRSFDEEEN GDEDLDEYFH QPEKKRRLTV DQVQFLEKSF EVENKLEPER  120
KTQLAKELGL QPRQVAIWFQ NRRARWKTKQ LEKDYDTLQA SFNTLKDDYG NLLKEKDKLK  180
QEVLQLTDKL VMKEKNNSEL SDVNTVCQEP PQKPVDSDSP HSSYPFEPDQ SDTSQDEEDN  240
LSKALFQPSS YIFPKLEDND YSDPPASSCS YGFHVEDHAF WSSAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19090.0flower|seedling| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469815.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
RefseqXP_016744332.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
SwissprotQ022831e-44HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D2LVS40.0A0A0D2LVS4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NZF70.0A0A1U8NZF7_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A2P5S3Z00.0A0A2P5S3Z0_GOSBA; Uncharacterized protein
STRINGGorai.001G073600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-46homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]