PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G073600.3 | ||||||||
Common Name | B456_001G073600, LOC105787797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 26694.2 Da PI: 4.4288 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.1e-20 | 37 | 90 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++++LAk+lgL+ rqV +WFqNrRa++k Gorai.001G073600.3 37 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 90 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.6 | 5.3e-41 | 36 | 127 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ +L ke+++L++e+ Gorai.001G073600.3 36 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEV 126 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 Gorai.001G073600.3 127 L 127 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-20 | 25 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 35 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-17 | 37 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.04E-17 | 37 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 39 | 99 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.4E-6 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.4E-6 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.9E-14 | 92 | 133 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVSFEDVHGG NRSFFRSFDE EENGDEDLDE YFHQPEKKRR LTVDQVQFLE KSFEVENKLE 60 PERKTQLAKE LGLQPRQVAI WFQNRRARWK TKQLEKDYDT LQASFNTLKD DYGNLLKEKD 120 KLKQEVLQLT DKLVMKEKNN SELSDVNTVC QEPPQKPVDS DSPHSSYPFE PDQSDTSQDE 180 EDNLSKALFQ PSSYIFPKLE DNDYSDPPAS SCSYGFHVED HAFWSSAY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 92 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1909 | 0.0 | flower|seedling| flowering |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469806.1 | 1e-167 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
Refseq | XP_012469815.1 | 1e-167 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2 | ||||
Refseq | XP_016744331.1 | 1e-167 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
Refseq | XP_016744332.1 | 1e-167 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2 | ||||
TrEMBL | A0A0D2LVS4 | 1e-166 | A0A0D2LVS4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2PMW7 | 1e-166 | A0A0D2PMW7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2QLT7 | 1e-166 | A0A0D2QLT7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NZD9 | 1e-166 | A0A1U8NZD9_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
TrEMBL | A0A1U8NZF7 | 1e-166 | A0A1U8NZF7_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X2 | ||||
TrEMBL | A0A2P5S3Z0 | 1e-166 | A0A2P5S3Z0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G073600.1 | 1e-161 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-46 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G073600.3 |
Entrez Gene | 105787797 |
Publications ? help Back to Top | |||
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