PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G073600.2
Common NameB456_001G073600, LOC105787797
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32899.1 Da    PI: 4.549
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G073600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629e-2096149356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa++k
  Gorai.001G073600.2  96 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 149
                         56689************************************************9 PP
2HD-ZIP_I/II126.98.7e-4195186192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++  +L ke+++L++e+
  Gorai.001G073600.2  95 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEV 185
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                          
  Gorai.001G073600.2 186 L 186
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-2084153IPR009057Homeodomain-like
PROSITE profilePS5007117.70291151IPR001356Homeobox domain
SMARTSM003891.1E-1994155IPR001356Homeobox domain
CDDcd000862.25E-1896152No hitNo description
PfamPF000464.6E-1796149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-2098158IPR009057Homeodomain-like
PRINTSPR000313.5E-6122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6131147IPR000047Helix-turn-helix motif
PfamPF021838.5E-14151192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAGGRVFSCN NTNSVGGSNN LSVLLQSQRV PSSSEPMDPL FIPRPGSSPY SFFVSGTRSM  60
VSFEDVHGGN RSFFRSFDEE ENGDEDLDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP  120
ERKTQLAKEL GLQPRQVAIW FQNRRARWKT KQLEKDYDTL QASFNTLKDD YGNLLKEKDK  180
LKQEVLQLTD KLVMKEKNNS ELSDVNTVCQ EPPQKPVDSD SPHSSYPFEP DQSDTSQDEE  240
DNLSKALFQP SSYIFPKLED NDYSDPPASS CSYGFHVEDH AFWSSAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19090.0flower|seedling| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469806.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
RefseqXP_016744331.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022831e-44HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D2PMW70.0A0A0D2PMW7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NZD90.0A0A1U8NZD9_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGGorai.001G073600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]