PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G024300.1
Common NameB456_001G024300, LOC105804536
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 284aa    MW: 30916.3 Da    PI: 5.3129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G024300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd  l+++v+ +G+g +W + + + g++R++k+c++rw++yl
  Gorai.001G024300.1 14 RGPWSPEEDATLKNYVQSHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding46.87.1e-1569111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd ++  +  q+G++ W++Ia+ ++ gRt++++k++w++
  Gorai.001G024300.1  69 GGFTEEEDNIICSLYSQMGSR-WSLIASQLP-GRTDNDVKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.385962IPR017930Myb domain
SuperFamilySSF466895.14E-2811109IPR009057Homeodomain-like
SMARTSM007176.8E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241569IPR009057Homeodomain-like
CDDcd001671.69E-81662No hitNo description
PROSITE profilePS5129423.46863117IPR017930Myb domain
SMARTSM007175.1E-1467115IPR001005SANT/Myb domain
PfamPF002494.1E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2570117IPR009057Homeodomain-like
CDDcd001675.46E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYVQ SHGTGGNWIA LPLKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC SLYSQMGSRW SLIASQLPGR TDNDVKNYWN TKLKKKLLAG  120
KSSFNVENNG GLLNANNNNI PTQPLPYNLD YSTTSLPILS DVSYGFSVSN CSTSQNMGLD  180
PVMQFSTPDT ITNLSQSGPN LDNSHNNIVV VSSSQEGSAL SDSTGNGYGE DTGSIILMDD  240
QQFSYEFPYE FVNGVLAGPS FEFSHGDIKT SQGLNQSVAT NPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
1h8a_C5e-261411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591459e-71AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492688.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A0D2N4Q10.0A0A0D2N4Q1_GOSRA; Uncharacterized protein
STRINGGorai.001G024300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2211545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-70myb domain protein 84
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]