PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G020600.2 | ||||||||
Common Name | B456_001G020600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26444.8 Da PI: 6.4299 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l +++ +G g W+ +++ g++R++k+c++rw++yl Gorai.001G020600.2 14 KGAWTALEDKILTSYIHVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Gorai.001G020600.2 67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.637 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.05E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.862 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 69 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.64E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRSPCCSKE GLNKGAWTAL EDKILTSYIH VHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAIRCSSKV 120 MVPLQPPATH QHGQHHYTNN NEEMGGGIST IEAHNGIQML ESLYSDGGSN LLSFEINELL 180 KSHDGGEFEE NPMQQHFPLG EAMLKDWSTC PCLDDNGATD LESLAFLLDT DEWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 12 | 112 | 25 | 124 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336284 | 0.0 | AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488054.1 | 1e-168 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A0D2LTN3 | 1e-173 | A0A0D2LTN3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G020600.1 | 1e-168 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 5e-63 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G020600.2 |
Publications ? help Back to Top | |||
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