PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G020300.1 | ||||||||
Common Name | B456_001G020300, LOC105801037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 596aa MW: 67078.8 Da PI: 7.1827 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.8 | 1.4e-28 | 411 | 494 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+ ev aLi++r ++e+++r+ lk+p We+vs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s++s+tc+yfdql Gorai.001G020300.1 411 RWPIAEVEALIQVRCDLESKFREPGLKGPVWEQVSSLMSSFGYQRSAKKCKEKWENINKYFRKSKENGKKR-SQQSKTCSYFDQL 494 8********************************************************************98.78889*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.411 | 408 | 468 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.3E-20 | 410 | 496 | No hit | No description |
CDD | cd12203 | 1.42E-24 | 410 | 475 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MHPIKYGAHH HHHHHHHHLQ QQQFMEDDDA SSSDSIFFIS NPHNHQQQPV FPYPLHSQQH 60 NKQHENPVTH QLFHHQFQPF QHPEPVHHHN QQQPFLAVNF KLGLNENSGK KEAALPLNPQ 120 QNGATFLHGN EQQQQHSLFL PRCLPPQEDS PIKEPFWKPL NRLDNRQCSA DGAKMVEGTK 180 YNKVLQQPGQ STSERSRNLD SKYGLFGELE AIYGLGKRGE AAQAGSGSAL TGENSPANVG 240 PSMNLTKFQE HDVVGANGGG GNVVATGVDH GSEASIGKEA SLRKVQKKKR KMKMKEQLSS 300 MVVAFESLVK QVTDHQECLH KRFLEFIERM DKERSVKEES WRQQEAEKRN REAVARAHEQ 360 ALASSREALI VSYLEKITGE SINLPGKTPL LQQPGNAMEP FNGVKVDNSS RWPIAEVEAL 420 IQVRCDLESK FREPGLKGPV WEQVSSLMSS FGYQRSAKKC KEKWENINKY FRKSKENGKK 480 RSQQSKTCSY FDQLGQLYSR IPITCPTSPT PLINSDIEVQ KQGDSDFLEA YIPERDLVTA 540 QVNISGNLKD SGMNIPKLDF DGIVGENVAQ GSKVKYNESH ESELDGDDND SDKGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 290 | LRKVQKKKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012487856.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A0D2N4K8 | 0.0 | A0A0D2N4K8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G020300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16469 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 6e-48 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G020300.1 |
Entrez Gene | 105801037 |
Publications ? help Back to Top | |||
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