PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G002200.1 | ||||||||
Common Name | B456_001G002200, LOC105762221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 336aa MW: 36264.1 Da PI: 9.916 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 257 | 315 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYegeH+h+ Gorai.001G002200.1 257 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPSMLIVTYEGEHRHS 315 69************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.9E-18 | 211 | 254 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-32 | 245 | 315 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.664 | 251 | 317 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 254 | 315 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-37 | 256 | 316 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-27 | 258 | 314 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAVDLMSFPK MDDQMAIQEA ATQGMKSMEH LISLLSHQSN RLDCAEVADL TVSKFKKVIS 60 LINRTGHARF RRAPIQSSSF SSPSSSAASL TVTDSHKALT RTPAPVETPP LTVNPAPVEA 120 PSTDPASFVP LQPQSLTLDF TKPCLFSSNT KSTELEFTKE SFSVSSNSSF MSSAITGDGS 180 VSNGKQGSSL FLTPAAAVSS GKPPLSSAPF KKRCREHEHS ENVSGNGKCH CSKRRKNRVK 240 KVIRVPAISS KIADIPADEY SWRKYGQKPI KGSPYPRGYY KCSTVRGCPA RKHVERATDD 300 PSMLIVTYEG EHRHSEGAAQ ENMAPGVGLV VFKST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 244 | 326 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2855 | 0.0 | seedling |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN604988 | 0.0 | JN604988.1 Gossypium hirsutum WRKY11-1 mRNA, complete cds. | |||
GenBank | KF031093 | 0.0 | KF031093.1 Gossypium hirsutum WRKY transcription factor 48 (WRKY48) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435756.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-142 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0D2PRN5 | 0.0 | A0A0D2PRN5_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0N6X4E6 | 0.0 | A0A0N6X4E6_GOSHI; WRKY11-1 | ||||
STRING | Gorai.001G002200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-124 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G002200.1 |
Entrez Gene | 105762221 |