PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ53511.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 341aa    MW: 37188.2 Da    PI: 7.2948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ53511.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.4e-13190215126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y    C+++ +tG+C+yGd+CkF+H+
  KXZ53511.1 190 YQPDVCKDYKETGYCSYGDTCKFMHD 215
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-9188220IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-8189216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169189217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-12190220IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.3E-9251316IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.77E-10268315No hitNo description
PROSITE profilePS500899.996269310IPR001841Zinc finger, RING-type
CDDcd001621.13E-5269312No hitNo description
SMARTSM001842.3E-5269310IPR001841Zinc finger, RING-type
PROSITE patternPS005180288297IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGDVNETGRP SDAINEGAAA SAGPSSAAMA AAGGTAGLFR RKRGGANVRK RGGDNSDDDD  60
GEGAGGVVRK AKQQRGDAAL AFTTAKADKP DLMVAFAGSK ALQDGKDTLA TRVLETETEY  120
DRDARAQRER VLKQATDGVT DDGTYKGMNA YIDYRKGFRS EHTVASEKGT GSHGPLRGSA  180
YVRVSARFDY QPDVCKDYKE TGYCSYGDTC KFMHDRGDYK SGWELDKMWE EEQKRKAEAL  240
AKGWNPDADG EEEEQQEAAR ADDELPFACF ICREQWEACK GPPVVTKCRH YFCEKCALKH  300
NAKTSKCAVC GQATQGIFNV AADIIKRQKR LQAAETAKVQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-57106334112323RING finger protein 113A
5z58_M2e-57106334112323RING finger protein 113A
6ff4_t2e-57106334112323RING finger protein 113A
6ff7_t2e-57106334112323RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001696382.11e-177predicted protein
SwissprotQ8GX846e-92C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A150GUK60.0A0A150GUK6_GONPE; Uncharacterized protein
STRINGEDP083591e-176(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.16e-89C3H family protein