PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ52722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | C3H | ||||||||
Protein Properties | Length: 198aa MW: 19756.5 Da PI: 8.4424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.4e-10 | 17 | 41 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++ G+C +G++CkF+H++ KXZ52722.1 17 EPDCAHYLKKGWCAFGPTCKFNHPE 41 589********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.666 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 16 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-8 | 17 | 41 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 20 | 40 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MLASSLGFAG YPVRAEEPDC AHYLKKGWCA FGPTCKFNHP EIQPSILNTY SFNQPPAAYV 60 SLPTTTFPST AVYSVPSAVP TLYYLPPGVG PSQLAGSTVG LLPGNVGAVT AGPTSQLTFA 120 QQSALGAAAP SQLYRQQAAL MPYGSMGETA IGGGMGGGMG GGMGGGMGGG MGGSSVSALQ 180 EAFQGLALGR AGGLGRSK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002947962.1 | 2e-68 | hypothetical protein VOLCADRAFT_103744 | ||||
TrEMBL | A0A150GSN0 | 1e-136 | A0A150GSN0_GONPE; Uncharacterized protein | ||||
STRING | XP_002947962.1 | 7e-68 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6232 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 2e-12 | zinc finger protein 1 |