PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ52280.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 579aa    MW: 60623.6 Da    PI: 5.3696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ52280.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.5e-08628326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                ++lC+ ++ +G C++G+ C F+H 
  KXZ52280.1  6 QVLCK-YHVSGVCRFGADCAFSHN 28
                689**.*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.58E-6328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089330IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4429IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5628IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5832IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8493158IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-43559IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976349377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5349375IPR000571Zinc finger, CCCH-type
SMARTSM003560.028350376IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.08E-12412482No hitNo description
Gene3DG3DSA:3.30.40.105.6E-12416485IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.09E-7418478No hitNo description
PfamPF146344.3E-8418477IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.622419476IPR001841Zinc finger, RING-type
SMARTSM001841.2E-6419475IPR001841Zinc finger, RING-type
PROSITE patternPS005180442451IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.85505533IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.31505534IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MSDKSQVLCK YHVSGVCRFG ADCAFSHNLS DLPSQVCKFY LAGCCAYGDR CRYDHKRPDY  60
WKAKNSGTQQ PQQQPQQQPQ RRAVTGAASD GAGAGAGGGA GAGGGRGGGM AVASRGGDPY  120
ARAWDAHEPR DPSHPHLVAR AAARSSAGAG AGGAAAAAPD NGDAGQPPGD SWEDAYGEYD  180
EYEGDEYGEG YGDDEADYGQ AHEGGEAAEG AAAFGGELAP PAAVSGAAAT RRCGPVGQQV  240
APSNAVAVAD GHGYDDEVYD EGAEEEGDDS QGAQGHGLVM VDDDIGLLEE ARAVARRGRA  300
LPPGAAESAW AAERHPWEGA GAGAQGPGHA GGGGGGCGGG RAPTEPVDPA DVELCPGFAL  360
HGRCAEGDDC PLIHGLECEV CRKFRIHPYN VAAAGEHRAA CRLRHERLEA RLRSSGVECG  420
ICLERVLDKP SVSERRFGLL ACDHAFCLAC IRSWRERTAD ASLATDTAVR TCPVCRTPSH  480
FVTPSLVWPA SAEEKAGILD AYRARLATLD CKHFDFGDGT CPFSTSCFYR HVYRDGRLEE  540
PTLRRAGDAD GGVRVVMPVR LSAFFDTPQA QRLLGGRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002945758.11e-139hypothetical protein VOLCADRAFT_102729
TrEMBLA0A150GSI30.0A0A150GSI3_GONPE; Uncharacterized protein
STRINGXP_002945758.11e-138(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-58C3H family protein