PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ49024.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

Nin-like

Protein Properties

Length: 533aa MW: 53573.1 Da PI: 4.7226

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ49024.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	65.2	1.1e-20	410	452	10	52
RWP-RK 10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ F+lp dAA++Lgv++T LKr+CRq+GIkRWP+Rk++sl KXZ49024.1 410 MRRVFDLPTSDAARSLGVSTTELKRRCRQLGIKRWPQRKLQSL 452 7899************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.518	387	472	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-19	410	452	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MLSQQPQQPL PRPALSAAAL AAAANGPILQ VVQLLGGSPE DSLVTSHLLD ELSAMPWPFA 60 SVPGSQILNA SGPGMDWVCS TDANQQPPSP HPTSMPGGGP GPGPAPTSPA PWVPQPLAAA 120 AATGAVSFTV VNMMDLPFPA ALACGGTASG APLWVGTPAL EASVCAPPAP RESWGAPAAA 180 EPGDALPLPP AAPPLPAVAI AAPAQMMGCS QQLSEPSYGA QRARTASSVD AAMVGNATLF 240 SAPATEPSAG LPPGAMTAVA VAPPPSPSAY GQPTGHISRW TVQLSPAGGD GGGEPLAMSA 300 GPGGPGAPPS GRVSEPSSTT MSSGLPYGAA AAPFPTTPLV AQFGCISVVS NGDSVMGGAK 360 DGSGAAGAGA DISSGSSGGA AADGGRSGGG KAGRGRPSKA ARGPELLALM RRVFDLPTSD 420 AARSLGVSTT ELKRRCRQLG IKRWPQRKLQ SLRRIQEAAE TDEHMPEDAR ELIRERVERN 480 RAEILEDPDT PLLSSLLSLR QAQYKQAHER RVVPAPREAG DGEDADEGED VED

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MLSQQPQQPL PRPALSAAAL AAAANGPILQ VVQLLGGSPE DSLVTSHLLD ELSAMPWPFA  60
SVPGSQILNA SGPGMDWVCS TDANQQPPSP HPTSMPGGGP GPGPAPTSPA PWVPQPLAAA  120
AATGAVSFTV VNMMDLPFPA ALACGGTASG APLWVGTPAL EASVCAPPAP RESWGAPAAA  180
EPGDALPLPP AAPPLPAVAI AAPAQMMGCS QQLSEPSYGA QRARTASSVD AAMVGNATLF  240
SAPATEPSAG LPPGAMTAVA VAPPPSPSAY GQPTGHISRW TVQLSPAGGD GGGEPLAMSA  300
GPGGPGAPPS GRVSEPSSTT MSSGLPYGAA AAPFPTTPLV AQFGCISVVS NGDSVMGGAK  360
DGSGAAGAGA DISSGSSGGA AADGGRSGGG KAGRGRPSKA ARGPELLALM RRVFDLPTSD  420
AARSLGVSTT ELKRRCRQLG IKRWPQRKLQ SLRRIQEAAE TDEHMPEDAR ELIRERVERN  480
RAEILEDPDT PLLSSLLSLR QAQYKQAHER RVVPAPREAG DGEDADEGED VED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	389	GGRSGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150GGS7	0.0	A0A150GGS7_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-16	RWP-RK domain-containing protein