PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.U024400.1.p | ||||||||
Common Name | GLYMA_U024400, LOC100810352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 314aa MW: 35918.6 Da PI: 8.5848 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.4 | 1.8e-13 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+s+r+ kR++ +lKK eELS LC++e++ i+++++ Glyma.U024400.1.p 10 FIGNDSKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPN 51 7999************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.568 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.83E-24 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-19 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-13 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAPGKLKLTF IGNDSKRKNV CKKRKQSLLK KTEELSMLCG VEACAIVYGP NDPRPVIWPS 60 EFGVENVLRK FMSMPHWEQS KKMVNQESFI AQSIMKSKEK LQKIVKENKD IEMSLFMAHC 120 FKTGMFQPDI NMTTADMNVL ASIIEQNLKD IDKRMEMLKA NQVIPNQPDV ETSTLQPQIM 180 HTLTYQPPMQ TFAFQPQIQI PEFQTQIQTP EFPTQTYQSK MQTQTFQPQM QSPALFQPRM 240 QSLAFFQPQI MQTPSYQPQI MQTPSYQPHM QTPALEDMTL LNYGNGSGMQ MQQFNGNGYE 300 TTMLAFGGAN FPL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.U024400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235739 | 0.0 | AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537339.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0B2PWH7 | 0.0 | A0A0B2PWH7_GLYSO; Agamous-like MADS-box protein AGL80 | ||||
STRING | GLYMA11G30482.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36819 | 2 | 2 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-38 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.U024400.1.p |
Entrez Gene | 100810352 |