PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U022100.1.p
Common NameGLYMA_U022100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 449aa    MW: 49127 Da    PI: 6.191
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U022100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17160209155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.U022100.1.p 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209
                        78*******************......55************************997 PP
2AP241.33.8e-13252302155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Glyma.U022100.1.p 252 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 302
                        89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-16160218IPR016177DNA-binding domain
PfamPF008475.0E-9160209IPR001471AP2/ERF domain
CDDcd000182.89E-11161219No hitNo description
SMARTSM003803.3E-32161223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17161218IPR001471AP2/ERF domain
PROSITE profilePS5103217.794161217IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-17252311IPR016177DNA-binding domain
PfamPF008471.1E-8252302IPR001471AP2/ERF domain
CDDcd000181.19E-25252312No hitNo description
PROSITE profilePS5103215.527253310IPR001471AP2/ERF domain
SMARTSM003802.5E-32253316IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-16253310IPR001471AP2/ERF domain
PRINTSPR003674.5E-6254265IPR001471AP2/ERF domain
PRINTSPR003674.5E-6292312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLDLNLNAEW TDSFSNGESP LPLEKFPDGL RNQMAESGTS NSSVVNADGS SNGGGDEDSD  60
STRAADDVYT TFNFDILKVE GANGFVTKEL FPVMSEGAKG HATSSFSGTN GFVDLSFDGD  120
GGNTSEMKML QPQNQNQTQT RTQTQQPAKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNLSD YEDDLKQMQN LSKEEFVHIL  240
RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA RAYDKAAIKC  300
NGREAVTNFE PSTYEGELKS AAINEGGSQN LDLNLGIATP GPPKENWGQL QFPSFPYNTH  360
GGRSSMERAE RIGVDPSNGL PNWAWQTHGQ VNATPVPTFS AAASSGFSIS ATFPSAAIFP  420
TSSMNSIPQS LCFTSSSMPT RNASEYYY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.338840.0cotyledon| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U022100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189749.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-107RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445I1U10.0A0A445I1U1_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform B
STRINGGLYMA11G15650.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-112related to AP2.7