PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.U021300.1.p

Common Name

GLYMA_U021300, LOC778106

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 311aa MW: 34162 Da PI: 7.7147

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.U021300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.9	1.4e-40	35	96	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Glyma.U021300.1.p 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	23	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-34	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDPSSGQHQQ MSSQSLENML ACSKAHQERK PTPQPEQALK CPRCDSTNTK FCYYNNYSLS 60 QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSST SKRVQDQAFT PNVNPLTGLP 120 SLMSYDSNDL TLALARLQKQ SCGQLGYDDH DLSMLGNHHT NTPCGDNILG MHHHSSSSST 180 NPGFLDALRS GFLGTQSNNN MHQNMYYGYG NGDMGEVDNG GGVGVSSSGE MMMMMMPYNN 240 DQEMSIASTQ AVTVTTMKQE ICNGREQKVL WGFPWQLNGD TNMGELDSGR ASNWNGINSS 300 WHGLLNSPLM *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28633	0.0	meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.U021300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857263	0.0	DQ857263.1 Glycine max Dof13 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538037.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	A0A445I1Q6	0.0	A0A445I1Q6_GLYSO; Dof zinc finger protein DOF2.1 isoform A
STRING	GLYMA11G15761.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.U021300.1.p
Entrez Gene	778106