PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.U018600.1.p | ||||||||
Common Name | GLYMA_U018600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 241aa MW: 26568.6 Da PI: 7.0564 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 6.9e-10 | 76 | 121 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +++r NReA r++R++Kka ++ Lee+vk+L N++L +l+ Glyma.U018600.1.p 76 SKQKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHMVNQQLVRKLQ 121 57999999*********************************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-8 | 72 | 139 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.3E-13 | 72 | 140 | No hit | No description |
PROSITE profile | PS50217 | 8.818 | 74 | 140 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.6E-14 | 74 | 129 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 3.03E-10 | 77 | 131 | No hit | No description |
SuperFamily | SSF57959 | 4.13E-7 | 77 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MDDGNAELSD KLSDNNVLFL NPESCSSFQA SSSSRTCTHT HTCNPPGPDA AHTHTCYHTH 60 TQVFAPEDDG RKHSNSKQKR PSGNREAVRK YREKKKAHTA YLEEEVKKLH MVNQQLVRKL 120 QGQALLEAEL ARLRSILARL KGKIDSELGA WPFQKQYCNT SYIFKEGDAG LECQKNNLPC 180 FHPHVGSSSQ VNICACGKSM IPLDGNCQPE MVDCQVDANN MTSTEGQTVD NIMSSASQDG 240 * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.U018600.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT092654 | 0.0 | BT092654.1 Soybean clone JCVI-FLGm-11O24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237285.2 | 0.0 | basic leucin zipper protein | ||||
Refseq | XP_025983390.1 | 0.0 | basic leucin zipper protein isoform X1 | ||||
Swissprot | Q8GTS2 | 9e-49 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A445I233 | 0.0 | A0A445I233_GLYSO; Basic leucine zipper 23 isoform A | ||||
STRING | GLYMA11G16050.5 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2567 | 32 | 77 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51960.1 | 2e-25 | basic leucine zipper 24 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.U018600.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|