PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G219100.1.p
Common NameGLYMA_20G219100, LOC100790771
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 431aa    MW: 47204.1 Da    PI: 7.7428
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G219100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-113864127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C+++ rtG C++G++C+F+H+p
  Glyma.20G219100.1.p 38 PGEPDCSYYIRTGLCRFGATCRFNHPP 64
                         5789*********************97 PP
2zf-CCCH39.21.1e-1285109327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Glyma.20G219100.1.p  85 QPECQYYLKTGTCKFGATCKFHHPK 109
                          799********************96 PP
3zf-CCCH38.51.9e-12131155327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+G++CkF+H++
  Glyma.20G219100.1.p 131 EPECTYYLRTGQCKFGNTCKFHHPQ 155
                          799********************97 PP
4zf-CCCH345e-11290316127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+ +tG Ck+G+ C+F+H++
  Glyma.20G219100.1.p 290 PGQPECQFYVKTGDCKFGAVCQFHHPR 316
                          5789*********************96 PP
5zf-CCCH37.73.4e-12337362227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++lC f++r+G+Ck+G++CkF H++
  Glyma.20G219100.1.p 337 GEPLCVFYSRYGICKFGPSCKFDHPM 362
                          579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-53764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5873765IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-83964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-54265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-44363IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-682109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1482110IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-1085109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-588109IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939128156IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6131156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4134154IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986289317IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5293319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5295317IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802335363IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5338363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4340361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
METNNNLNLI VPNPQDSLWM MNLRTGETMD SGSYPERPGE PDCSYYIRTG LCRFGATCRF  60
NHPPNRRLAI ATARMIGEFP ERIGQPECQY YLKTGTCKFG ATCKFHHPKD QAGIAGRVAL  120
NILGYPLRPN EPECTYYLRT GQCKFGNTCK FHHPQPSNMM LSLRGSPVYP TVHSPTTPGQ  180
ESYAGGITNW SRGSYIPSPR WQGPSSYGPL ILPQGVVSVP GWSAYSGQMG SISTSDSPQQ  240
AMRNGQTYET SHQGELANAG SQGAYSQFRS GTVPVGFYTL QRENIFPERP GQPECQFYVK  300
TGDCKFGAVC QFHHPRERLI PAPDCVLSPI GLPLRLGEPL CVFYSRYGIC KFGPSCKFDH  360
PMEIFSYNIT TSPSADAPSR HLLGSSSGTA ALNLSSEGLV ESSSAKPRPL SLSEIRQIPS  420
GDDNIDDDVA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.138610.0cotyledon| flower| hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G219100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606433.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1NIJ30.0I1NIJ3_SOYBN; Uncharacterized protein
STRINGGLYMA20G36140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-175zinc finger protein 1