PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G184500.1.p
Common NameGLYMA_20G184500, LOC100781887
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 332aa    MW: 37532.9 Da    PI: 9.3932
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.6e-1845138283
             trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                          Wt qe+l Li+a++ ++er  ++             + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k ++++ ++ 
  Glyma.20G184500.1.p  45 WTIQETLILITAKKLDDERRLKTPaacststtttrtSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSNDNDNNNN 134
                          *************9555554443223455566666699*******************************************988888777 PP

             trihelix  80 pyfd 83 
                          ++f 
  Glyma.20G184500.1.p 135 KHFP 138
                          7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.86437113IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-538115IPR009057Homeodomain-like
PfamPF138371.3E-1144141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSDPSTLLPS SHHHHNHHVP LIQGGATAPS SSSTTLAREY RKGNWTIQET LILITAKKLD  60
DERRLKTPAA CSTSTTTTRT SGELRWKWVE NYCWSHGCLR SQNQCNDKWD NLLRDYKKVR  120
DYESKSNDND NNNNKHFPSY WTLNKQQRKE QNLPSNMVFE VYQTIADVLQ RKQTQSQRQH  180
QQPLAIPLVT SSPSPLQTLP PPPLPPPPPP PPPPPPVSST TPVGSERSES SGTEHSEDDD  240
DGSESKRRKV KNLGSRIMQS ASVLARALRS CEEKKEKRHR EMIELEQRRI QMEEARNEVH  300
RQGIATLVAA VTNLSGAIES LINNSERHGQ R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2210260.0KF221026.1 Glycine max cultivar Williams 82K clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210290.0KF221029.1 Glycine max cultivar Kwangkyo clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210310.0KF221031.1 Glycine max cultivar Seoritae clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210330.0KF221033.1 Glycine max cultivar Haman clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210350.0KF221035.1 Glycine max cultivar Hwangkeum clone 3f3r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606274.10.0trihelix transcription factor ASR3
RefseqXP_028219696.10.0trihelix transcription factor ASR3-like
TrEMBLA0A445F7470.0A0A445F747_GLYSO; Trihelix transcription factor ASR3
TrEMBLK7N4B10.0K7N4B1_SOYBN; Uncharacterized protein
STRINGGLYMA20G32540.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-42Trihelix family protein