PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G157900.3.p | ||||||||
Common Name | GLYMA_20G157900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 20981.3 Da PI: 6.5048 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.2e-11 | 2 | 29 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 lG++ W++I+++++ gRt++++k++w++yl Glyma.20G157900.3.p 2 LGNK-WSRISQHLP-GRTDNEIKNYWHSYL 29 8999.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.671 | 1 | 33 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-9 | 1 | 29 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.26E-9 | 2 | 35 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-14 | 2 | 30 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-7 | 4 | 29 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MLGNKWSRIS QHLPGRTDNE IKNYWHSYLK KRVAKAKEME SHNQIKYASS SSDTMDSSHS 60 LQNLATQCPL NYNFTKEASQ SSLPKLLFAE WLSLDHLNSA NSVDSLGLRN GFDQNSSFHE 120 AAIHDMSEVP FGGEYNRCVS NISAPEMFNS QLKYGNQMVE NGYIHCMPGV DLSSNFSISN 180 DAIMYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G157900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235230 | 0.0 | AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556102.1 | 1e-136 | transcription factor LAF1 | ||||
TrEMBL | A0A0R0EN46 | 1e-136 | A0A0R0EN46_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G29710.1 | 1e-135 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-15 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G157900.3.p |