PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G156800.1.p
Common NameGLYMA_20G156800, LOC100780987
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 301aa    MW: 33295.6 Da    PI: 8.7091
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G156800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36241142101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+++g+sf+v++++ fak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k
  Glyma.20G156800.1.p  24 FLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTAFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRRGEK 104
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Glyma.20G156800.1.p 105 RLLCEIQRRK 114
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-5820113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAPPLEHNGV STSGDSQRSI PTPFLTKTYQ LVDDHTIDDV ISWNDSGSSF IVWNTTAFAK  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNEYFR RGEKRLLCEI QRRKILSASP  120
PPAGATATVA VPSPLPLSAI PTAKPIVSPS NSAEEQVLSS NSSPARAPVE LLDENERLRK  180
ENILLTKELV KMRSLCNNIF NLMSNYANAQ ADGSSAAAAK RCSGEDAVEE MNPKLFGVAI  240
GKKRAREEEG HGAKYDTALS LHQPFHADVK SEALDLPGRG ENKKTPWLNQ CHRANQRVCN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-242411329129Heat shock factor protein 1
5d5v_B3e-242411329129Heat shock factor protein 1
5d5v_D3e-242411329129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202330.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G156800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352300.0AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340399.10.0heat stress transcription factor 38
RefseqXP_028219736.10.0heat stress transcription factor B-2a
SwissprotQ9SCW42e-90HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A445F5L90.0A0A445F5L9_GLYSO; Heat stress transcription factor B-2a
TrEMBLI1NGR60.0I1NGR6_SOYBN; Uncharacterized protein
STRINGGLYMA20G29610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]