PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G136800.1.p
Common NameGLYMA_20G136800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23176.8 Da    PI: 10.0941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G136800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-222469449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +  sn+qvtfskRr+g++KKA+EL++LC++ va+i+fs+ +kl+ +
  Glyma.20G136800.1.p 24 DKGSNKQVTFSKRRAGLFKKASELCILCNVYVAIIVFSPADKLFCF 69
                         5679**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-301372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.7261373IPR002100Transcription factor, MADS-box
CDDcd002651.89E-311484No hitNo description
SuperFamilySSF554551.06E-261487IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-191535IPR002100Transcription factor, MADS-box
PfamPF003199.7E-222769IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-193550IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-195071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDMFKQKEKK KNTGRKKIEI KKLDKGSNKQ VTFSKRRAGL FKKASELCIL CNVYVAIIVF  60
SPADKLFCFG HPDIDSIIGR YLKGDNAEFE SAKSSKGKSV SCEERNRQYE EAMKKLELEK  120
KNLAQIEVLT KGWNRSWWDD PIDQMTDLQL EQFMVSIYEL RKKLAERAGE LMIHRQSPTF  180
LHSPEPSSPN KGSIKYTFSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-1614108291MEF2 CHIMERA
6bz1_B1e-1614108291MEF2 CHIMERA
6bz1_C1e-1614108291MEF2 CHIMERA
6bz1_D1e-1614108291MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416KQKEKKKNTGRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G136800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555310.11e-124agamous-like MADS-box protein AGL61
TrEMBLK7N3B61e-146K7N3B6_SOYBN; Uncharacterized protein
STRINGGLYMA20G27361.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-36AGAMOUS-like 61