PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G133600.1.p
Common NameGLYMA_20G133600, LOC100816788
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 359aa    MW: 39771.9 Da    PI: 4.593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G133600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102803201055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Glyma.20G133600.1.p 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 320
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14274336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12276330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-12279324No hitNo description
PfamPF000101.1E-7280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEPVQLVSEE WGSLCGFHTT EEADFMVQLF GGNTSVTEKH SGNTTFGFWP GHESTIVAIT  60
DTNSNSYLPP NFTDTNFLCF SQGSSSSTDN SGNNIFSTTS SGTYSCDPET NFDSVPMVLC  120
LGDAKFSPHS FQCDDYLSQQ INENTDEESS LDPWKLAIAD NNLQAKREYE MMVSEPVEED  180
RSRNLENLPK RLKSSIEVPK TSRNAKSRKN SKSASTSNDE DDRSLSLQVQ RNNSCFSQSD  240
SNAYLEPNGG ASKDPAPPNL DRKSRATTSA AADPQSLYAR KRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVQYVKFLQ LQIKLLSSED LWMYAPIVYN GINIGLDLGI SPTKGRSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G133600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351770.0AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555292.10.0transcription factor bHLH84
TrEMBLK7N3950.0K7N395_SOYBN; Uncharacterized protein
STRINGGLYMA20G26980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-38bHLH family protein