PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G130200.1.p
Common NameGLYMA_20G130200, LOC100809317
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 277aa    MW: 30074.3 Da    PI: 6.8494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G130200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000611531901254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ ++++ L++l+ +       K + a++L +A+ YI+ L
  Glyma.20G130200.1.p 153 RKEKLGERIAALQQLVSPF-----SKTDTASVLHEAMGYIRFL 190
                          77788899*********96.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-6133195No hitNo description
PROSITE profilePS5088811.128141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7152197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-10152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEAKKEYEVD HLTTLTGTSF SQLLFGDDDD DYDESALGLA VDQSYTRSPL FSIHKAPQML  60
CFANHQNQGD VLLPETNVTP QKSVITSSDS SSASASSCNH TNTAFNSLPK SNSLQKKRNG  120
MGQESVTKVG VGSQRQTKKN KAENPTSTGH AKRKEKLGER IAALQQLVSP FSKTDTASVL  180
HEAMGYIRFL HDQVQVLCSP YLQSLPSSYH QNQHGDGVIN EEEVNKDLRS RGLCLIPVGC  240
TVHVAGSNGA DFWSSAAIGN NVNFTISQAV KRNQDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G130200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918650.0BT091865.1 Soybean clone JCVI-FLGm-9A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605975.10.0transcription factor bHLH113 isoform X2
TrEMBLI1NFY50.0I1NFY5_SOYBN; Uncharacterized protein
STRINGGLYMA20G26630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-50bHLH family protein