PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G035800.1.p | ||||||||
Common Name | GLYMA_20G035800, LOC102662409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 378aa MW: 42681.7 Da PI: 6.6971 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2e-15 | 160 | 258 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+l +sdv+ +gr+vlpk+ ae+ + k+e++ ++l+d s +W++k++y ++ks++y+l +++ +Fv+ +L++gDf++++ + Glyma.20G035800.1.p 160 TKKLNNSDVGVLGRIVLPKREAEDKlpTLWKKEGINIVLKDvYSEIEWSIKYKYwtNNKSRMYIL-DNTGDFVNHYKLQTGDFITLY--K 246 58999*****************999**77777999******7788*******9985555555555.5********************..5 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 ++ ++l+v++++ Glyma.20G035800.1.p 247 DELKNLYVSARK 258 677778888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-23 | 153 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-19 | 158 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.25E-21 | 158 | 254 | No hit | No description |
SMART | SM01019 | 2.3E-14 | 159 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.277 | 159 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-11 | 161 | 258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MENFFVPFLK KNPNPSITTT GGNGSSSSNQ TSLVQPSTYP QNFPYNTSVK LNFPEQPYFI 60 PLYPFPTGQV SFSNQPYGMP NSELQGSRAC MTKATRERWR QVRQRSKNST LVAPNSVLER 120 TTREQFVPNG GSNVRITVKQ HNATKFFNTP NGKKLEEILT KKLNNSDVGV LGRIVLPKRE 180 AEDKLPTLWK KEGINIVLKD VYSEIEWSIK YKYWTNNKSR MYILDNTGDF VNHYKLQTGD 240 FITLYKDELK NLYVSARKDQ ENLEESKSSS NTGMSHEPDA YLAYLTKELS HKGKAEAANN 300 LLNNVEEEAP NQANQLHQFM PMNNIVGEGA SNQAIQEAAP AAPVNVNQEN KVVDDDDDDI 360 YGGLDNIFEI GNTYQIW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 2e-36 | 148 | 255 | 2 | 109 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-36 | 148 | 255 | 2 | 109 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00032 | PBM | Transfer from AT1G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G035800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605565.1 | 0.0 | B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | K7N181 | 0.0 | K7N181_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G04761.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12348 | 21 | 27 | Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 1e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G035800.1.p |
Entrez Gene | 102662409 |